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[173114_s_at]

Description AV182601_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182601 /DEF=Caenorhabditis elegans cDNA clone:yk640b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 79      6grp_total > 77      4grp_total > 03      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1092
1 2 3 4 range
A 1274.3
(-1.5)
P 		1124.1
(-3)
P 		1164.6
(-2.6)
P 		1711.5
(3)
P 		587
B 1290.2
(-2.2)
P 		1173
(-3)
P 		1193.2
(-2.9)
P 		2053.5
(3)
P 		881
C 1194.2
(-1.5)
P 		961.2
(-3)
P 		1191.6
(-1.5)
P 		1866.5
(3)
P 		905
avr 1252.9
(-1.7) 		1086.1
(-3) 		1183.1
(-2.3) 		1877.2
(3) 		791

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2284
1 2 3 4 5 6 range
A 1372.7
(-1.4)
P 		1180.3
(-2)
P 		843.1
(-3)
P 		1257.2
(-1.7)
P 		1874.5
(0.2)
P 		2779.9
(3)
P 		1937
B 1334.6
(-2.4)
P 		1182.8
(-3)
P 		1336
(-2.4)
P 		1507.3
(-1.7)
P 		1645.8
(-1.2)
P 		2710.3
(3)
P 		1528
C 1294.2
(-2.4)
P 		1107
(-3)
P 		1253
(-2.6)
P 		1683.2
(-1.3)
P 		1490.9
(-1.9)
P 		3127.4
(3)
P 		2020
avr 1333.8
(-2.3) 		1156.7
(-3) 		1144
(-3) 		1482.6
(-1.8) 		1670.4
(-1.2) 		2872.5
(3) 		1729
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 464
(3)
P 		244
(-3)
P 		304.4
(-1.4)
P 		250.5
(-2.8)
P 		220
B 411.4
(2)
P 		289.7
(-2.5)
P 		276.5
(-3)
P 		437.6
(3)
P 		161
C 395.3
(2.1)
P 		276.4
(-3)
P 		415.3
(3)
P 		314.7
(-1.3)
P 		139
avr 423.6
(3) 		270
(-3) 		332.1
(-0.6) 		334.3
(-0.5) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 863
1 2 3 4 5 6 range
A 253
(-2.2)
P 		419.8
(-0.1)
P 		183.6
(-3)
P 		318.9
(-1.4)
P 		565.7
(1.6)
P 		676.8
(3)
P 		493
B 464.4
(-1.8)
P 		393.7
(-2.4)
P 		324.4
(-3)
P 		399.2
(-2.3)
P 		668.7
(0)
P 		1010.6
(3)
P 		686
C 479.7
(-1.7)
P 		337.8
(-2.8)
P 		318.9
(-3)
P 		338.5
(-2.8)
P 		482.4
(-1.7)
P 		1046.9
(3)
P 		728
avr 399
(-1.8) 		383.8
(-2) 		275.6
(-3) 		352.2
(-2.3) 		572.3
(-0.2) 		911.4
(3) 		636
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173114_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26810
Sequence Type Exemplar sequence
Representative Public ID AV182601 NCBI
Target Description AV182601_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182601 /DEF=Caenorhabditis elegans cDNA clone:yk640b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066383 NCBI Caenorhabditis elegans C50C3.8 (C50C3.8) mRNA, complete cds. 11/11 None
C50C3.8.1 ENSEMBL cdna:known chromosome:CEL140:III:8161370:8163305:-1 gene:C50C3.8 11/11 None
C50C3.8.2 ENSEMBL cdna:known chromosome:CEL140:III:8161370:8163307:-1 gene:C50C3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8161429-8161696(-) 88.67 88.67
Public Domain and Genome References
Gene Title
Gene Symbol bath-42
Ensembl C50C3.8
Entrez Gene 176152 Entrez gene
SwissProt P34371 EMBL-EBI
WormBase CE00124 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27978 Hypothetical protein C50C3.8 [Caenorhabditis elegans] ref|NP_498784.1| C50C3.8 [Caenorhabditis elegans] sp|P34371|YLJ8_CAEEL Hypothetical protein C50C3.8 in chromosome III 0.0
blast CAE70197 Hypothetical protein CBG16671 [Caenorhabditis briggsae] 0.0
blast CAE72607 Hypothetical protein CBG19798 [Caenorhabditis briggsae] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.2E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.7E-33
Sequence
Target Sequence 
>C. ELEGANS:173114_S_AT
agtgctttcatttctctgtactacttgcgggtttccatgaatagtggttgtcctccaccc
tctctcttttcctcccgtttctatgtcacacaaagccccttctttaatcaacggatcaat
gccatcataattatcgttgtcattgcctgtaaatctcaagatccataatatccattctta
acttgtttcatcactcaacaccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCTTTCATTTCTCTGTACTACT 51 61 55 Antisense
CTGTACTACTTGCGGGTTTCCATGA 605 213 70 Antisense
ATGAATAGTGGTTGTCCTCCACCCT 283 25 91 Antisense
CTCCCGTTTCTATGTCACACAAAGC 643 233 126 Antisense
TCACACAAAGCCCCTTCTTTAATCA 638 627 140 Antisense
AGCCCCTTCTTTAATCAACGGATCA 336 81 148 Antisense
GGATCAATGCCATCATAATTATCGT 474 511 167 Antisense
TAATTATCGTTGTCATTGCCTGTAA 110 629 182 Antisense
CATTGCCTGTAAATCTCAAGATCCA 303 217 195 Antisense
TAATATCCATTCTTAACTTGTTTCA 621 633 220 Antisense
ACTTGTTTCATCACTCAACACCGTT 256 103 235 Antisense
Sequence Source Affymetrix Proprietary Database