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[173111_s_at]

Description AV182337_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182337 /DEF=Caenorhabditis elegans cDNA clone:yk636d4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 20      6grp_total > 28      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 734
1 2 3 4 range
A 1297
(3)
P 		1024.3
(0.4)
P 		970.3
(-0.1)
P 		660.1
(-3)
P 		637
B 1276.6
(3)
P 		1172.6
(1.6)
P 		1272.7
(2.9)
P 		838.1
(-3)
P 		439
C 1312.7
(2.3)
P 		1393.7
(3)
P 		1065.4
(0)
P 		726.7
(-3)
P 		667
avr 1295.4
(3) 		1196.9
(1.9) 		1102.8
(0.9) 		741.6
(-3) 		554

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 986
1 2 3 4 5 6 range
A 1367.2
(3)
P 		1278.7
(2.3)
P 		607.2
(-3)
P 		686.2
(-2.4)
P 		1241.7
(2)
P 		1076.5
(0.7)
P 		760
B 1469.9
(3)
P 		986.8
(0.1)
P 		484.1
(-3)
P 		875.5
(-0.6)
P 		844.7
(-0.8)
P 		1097.2
(0.7)
P 		986
C 1304.9
(3)
P 		994.1
(0.3)
P 		943.9
(-0.2)
P 		619.5
(-3)
P 		815.2
(-1.3)
P 		929.1
(-0.3)
P 		685
avr 1380.7
(3) 		1086.5
(0.5) 		678.4
(-3) 		727.1
(-2.6) 		967.2
(-0.5) 		1034.3
(0) 		702
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 472.2
(3)
P 		222.4
(-1)
P 		253.7
(-0.5)
P 		96.6
(-3)
P 		376
B 407.1
(3)
P 		289.6
(-0.1)
P 		294.9
(0.1)
P 		178.6
(-3)
P 		229
C 434.5
(3)
P 		400.7
(2.4)
P 		371.3
(1.8)
P 		122.5
(-3)
P 		312
avr 437.9
(3) 		304.2
(0.4) 		306.6
(0.4) 		132.6
(-3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 252
(-0.8)
P 		454.8
(3)
P 		132.2
(-3)
P 		174
(-2.2)
P 		374.7
(1.5)
P 		262.1
(-0.6)
P 		323
B 511.4
(3)
P 		328.5
(0.2)
P 		117.5
(-3)
P 		231.9
(-1.3)
P 		343.2
(0.4)
P 		409.1
(1.4)
P 		394
C 483.7
(3)
P 		303.3
(-0)
P 		240.2
(-1.1)
P 		124.6
(-3)
P 		263.8
(-0.7)
P 		311
(0.1)
P 		359
avr 415.7
(3) 		362.2
(1.7) 		163.3
(-3) 		176.8
(-2.7) 		327.2
(0.9) 		327.4
(0.9) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173111_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26790
Sequence Type Exemplar sequence
Representative Public ID AV182337 NCBI
Target Description AV182337_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182337 /DEF=Caenorhabditis elegans cDNA clone:yk636d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059350 NCBI Caenorhabditis elegans ZK484.3 (ZK484.3) mRNA, complete cds. 11/11 None
ZK484.3.1 ENSEMBL cdna:known chromosome:CEL140:I:6076661:6078257:-1 gene:ZK484.3 11/11 None
ZK484.3.2 ENSEMBL cdna:known chromosome:CEL140:I:6076740:6078259:-1 gene:ZK484.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6076765-6077024(-) 78.67 86.0
Public Domain and Genome References
Gene Title
Ensembl ZK484.3
Entrez Gene 266835 Entrez gene
SwissProt O44895 EMBL-EBI
WormBase CE15341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39389 Hypothetical protein ZK484.3 [Caenorhabditis elegans] ref|NP_491751.1| ZK484.3 [Caenorhabditis elegans] 3.0E-81
blast CAE72925 Hypothetical protein CBG20245 [Caenorhabditis briggsae] 5.0E-15
Sequence
Target Sequence 
>C. ELEGANS:173111_S_AT
tcaaatttcttcgtgcatttctctctccatcattcacattttcgttttattttcttcaaa
atgtcttctccaaatccttcttctcatcatgtttcattgctatctcatgtgcttttctca
atttcattttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATTTCTTCGTGCATTTCTCTC 358 629 91 Antisense
CTCTCCATCATTCACATTTTCGTTT 563 231 113 Antisense
CATTCACATTTTCGTTTTATTTTCT 24 217 121 Antisense
TTTCTTCAAAATGTCTTCTCCAAAT 117 673 141 Antisense
AAAATGTCTTCTCCAAATCCTTCTT 38 133 148 Antisense
TCCTTCTTCTCATCATGTTTCATTG 103 593 165 Antisense
TCTCATCATGTTTCATTGCTATCTC 353 613 172 Antisense
GTTTCATTGCTATCTCATGTGCTTT 118 451 181 Antisense
ATTGCTATCTCATGTGCTTTTCTCA 282 7 186 Antisense
ATCTCATGTGCTTTTCTCAATTTCA 138 33 192 Antisense
TGTGCTTTTCTCAATTTCATTTTAC 358 557 198 Antisense
Sequence Source Affymetrix Proprietary Database