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[173110_at]

Description AV182332_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182332 /DEF=Caenorhabditis elegans cDNA clone:yk636d1 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 11      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 5.8
(-2.9)
A 		10.1
(-1.8)
A 		5.4
(-3)
A 		28.8
(3)
A 		23
B 11.9
(3)
A 		1.6
(-3)
A 		3.5
(-1.9)
A 		5.2
(-0.9)
A 		10
C 4.3
(-3)
A 		10.2
(-1.7)
A 		7
(-2.4)
A 		32.1
(3)
A 		28
avr 7.3
(-2.3) 		7.3
(-2.3) 		5.3
(-3) 		22
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 10.6
(-2.9)
A 		1.6
(-3)
A 		1.8
(-3)
A 		25.5
(-2.8)
A 		411.1
(0.3)
P 		736.1
(3)
P 		735
B 1.7
(-3)
A 		3.3
(-3)
A 		30
(-2.8)
A 		27.4
(-2.8)
A 		359.8
(-0.4)
P 		817.1
(3)
P 		815
C 26.8
(-2.6)
A 		2.5
(-3)
A 		9.5
(-2.9)
A 		22.2
(-2.7)
A 		373.1
(2.8)
P 		385.2
(3)
P 		383
avr 13
(-2.9) 		2.5
(-3) 		13.8
(-2.9) 		25
(-2.8) 		381.3
(0.5) 		646.1
(3) 		644
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.1
(-1.5)
A 		2.2
(-1.3)
A 		1.4
(-3)
A 		4.2
(3)
A 		3
B 3.8
(3)
A 		0.4
(-3)
A 		0.8
(-2.3)
A 		1.1
(-1.8)
A 		3
C 1.4
(-3)
A 		2.9
(-0.8)
A 		2.5
(-1.4)
A 		5.4
(3)
A 		4
avr 2.4
(-0.6) 		1.8
(-2.4) 		1.6
(-3) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 1.9
(-2.9)
A 		0.6
(-3)
A 		0.4
(-3)
A 		6.5
(-2.8)
A 		124
(1.1)
P 		179.2
(3)
P 		179
B 0.6
(-3)
A 		1.1
(-3)
A 		7.3
(-2.9)
A 		7.3
(-2.9)
A 		146.2
(-0.1)
P 		304.7
(3)
P 		304
C 9.9
(-2.6)
A 		0.8
(-3)
A 		2.4
(-2.9)
A 		4.5
(-2.8)
A 		120.7
(2.6)
P 		128.9
(3)
P 		128
avr 4.1
(-2.9) 		0.8
(-3) 		3.4
(-2.9) 		6.1
(-2.8) 		130.3
(0.8) 		204.3
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26789
Sequence Type Exemplar sequence
Representative Public ID AV182332 NCBI
Target Description AV182332_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182332 /DEF=Caenorhabditis elegans cDNA clone:yk636d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV182332
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV182332 AV182332_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182332 /DEF=Caenorhabditis elegans cDNA clone:yk636d1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072668 8/11 Cross Hyb Matching Probes None
ZC513.6 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8033451-8033640(+) 63.0 63.0
Sequence
Target Sequence 
>C. ELEGANS:173110_AT
ttgtggtgaataaccacctccttccccatctatttatacattttgtcaaattgccatacg
tttttatgtcccatactaactataataacgcgcgcaatttgtaaatataataagctcaat
gttccttgtcatatagaagnncgnaacggtctcctgtctnnactaagcaggngagcggta
tggacgtgatagcagga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGGTGAATAACCACCTCCTTCC 485 707 65 Antisense
TCCTTCCCCATCTATTTATACATTT 78 593 83 Antisense
TCCCCATCTATTTATACATTTTGTC 183 597 87 Antisense
ACATTTTGTCAAATTGCCATACGTT 212 105 102 Antisense
TGCCATACGTTTTTATGTCCCATAC 80 585 116 Antisense
TATGTCCCATACTAACTATAATAAC 506 655 129 Antisense
AACTATAATAACGCGCGCAATTTGT 553 137 142 Antisense
AATAACGCGCGCAATTTGTAAATAT 26 173 148 Antisense
AATAAGCTCAATGTTCCTTGTCATA 67 173 173 Antisense
GCTCAATGTTCCTTGTCATATAGAA 138 303 178 Antisense
GAGCGGTATGGACGTGATAGCAGGA 173 385 237 Antisense
Sequence Source Affymetrix Proprietary Database