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[173107_at]

Description AV182916_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182916 /DEF=Caenorhabditis elegans cDNA clone:yk644c4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 47      4grp_high_8_8 > 40      6grp_total > 48      4grp_total > 55      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 289.5
(3)
P 		77.4
(-3)
P 		130.7
(-1.5)
P 		80.8
(-2.9)
A 		212
B 256.3
(3)
P 		144.6
(-1.3)
P 		106
(-2.8)
P 		100.2
(-3)
P 		156
C 261.5
(3)
P 		78.7
(-3)
P 		133.9
(-1.2)
P 		96.6
(-2.4)
P 		183
avr 269.1
(3) 		100.2
(-2.7) 		123.5
(-1.9) 		92.5
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 111.8
(1.5)
P 		73.1
(-2.2)
A 		102.3
(0.6)
P 		64.9
(-3)
M 		128
(3)
P 		101
(0.4)
P 		63
B 193.4
(1.8)
P 		77.4
(-2.8)
P 		111.4
(-1.5)
P 		101.1
(-1.9)
P 		72.1
(-3)
P 		224.5
(3)
P 		152
C 193.6
(3)
P 		107
(-0.5)
P 		44.4
(-3)
A 		67.2
(-2.1)
P 		56.6
(-2.5)
P 		157.4
(1.5)
P 		149
avr 166.3
(3) 		85.8
(-2.5) 		86
(-2.4) 		77.7
(-3) 		85.6
(-2.5) 		161
(2.6) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 105.4
(3)
P 		16.8
(-2.7)
P 		34.2
(-1.6)
P 		11.8
(-3)
A 		94
B 81.7
(3)
P 		35.7
(-1.6)
P 		24.6
(-2.7)
P 		21.4
(-3)
P 		60
C 86.6
(3)
P 		22.6
(-2.5)
P 		46.7
(-0.4)
P 		16.3
(-3)
P 		70
avr 91.2
(3) 		25
(-2.3) 		35.2
(-1.5) 		16.5
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 20.6
(-1.9)
P 		26
(-0.4)
A 		22.3
(-1.4)
P 		16.5
(-3)
M 		38.6
(3)
P 		24.6
(-0.8)
P 		22
B 67.3
(1.3)
P 		25.8
(-3)
P 		27
(-2.9)
P 		26.8
(-2.9)
P 		29.3
(-2.6)
P 		83.7
(3)
P 		58
C 71.8
(3)
P 		32.6
(-0.9)
P 		11.3
(-3)
A 		13.5
(-2.8)
P 		18.3
(-2.3)
P 		52.7
(1.1)
P 		61
avr 53.2
(2.9) 		28.1
(-1.4) 		20.2
(-2.8) 		18.9
(-3) 		28.7
(-1.3) 		53.7
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26823
Sequence Type Exemplar sequence
Representative Public ID AV182916 NCBI
Target Description AV182916_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182916 /DEF=Caenorhabditis elegans cDNA clone:yk644c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV182916
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV182916 AV182916_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV182916 /DEF=Caenorhabditis elegans cDNA clone:yk644c4 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10524084-10524322(-) 79.33 79.33
Sequence
Target Sequence 
>C. ELEGANS:173107_AT
ggcacgagctttcattcaattttctgatttcgctttacatggtgcctgtttctcgttcaa
tctgtactccgtttcattgccttgcttattttgtagttttatcagaccccaaatctcacg
taacgcttttcttaattgtgatgcatacatgtaggtttgacctgaactttgcttagaatt
aatttactattttcctgagcccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACGAGCTTTCATTCAATTTTCT 399 529 67 Antisense
CAATTTTCTGATTTCGCTTTACATG 430 179 83 Antisense
TTTCGCTTTACATGGTGCCTGTTTC 158 669 94 Antisense
TGTTTCTCGTTCAATCTGTACTCCG 480 561 113 Antisense
TCAATCTGTACTCCGTTTCATTGCC 648 633 123 Antisense
GTTTCATTGCCTTGCTTATTTTGTA 124 451 137 Antisense
GTAGTTTTATCAGACCCCAAATCTC 126 457 159 Antisense
CCCAAATCTCACGTAACGCTTTTCT 272 257 174 Antisense
AACGCTTTTCTTAATTGTGATGCAT 518 145 188 Antisense
GTAGGTTTGACCTGAACTTTGCTTA 163 45 217 Antisense
AATTTACTATTTTCCTGAGCCCAAT 468 175 247 Antisense
Sequence Source Affymetrix Proprietary Database