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[173106_at]

Description AV185003_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV185003 /DEF=Caenorhabditis elegans cDNA clone:yk672c8 : 3prime end, single read.
Cluster 4grp_high_8_8 > 26      6grp_total > 17      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 240.1
(3)
P 		100.9
(-3)
A 		120
(-2.2)
A 		204.7
(1.5)
P 		139
B 257.3
(3)
P 		216.5
(1.3)
P 		111.8
(-3)
P 		185.3
(0)
P 		146
C 293.4
(3)
P 		208.2
(0)
P 		122.8
(-3)
P 		152.3
(-2)
P 		171
avr 263.6
(3) 		175.2
(-0.6) 		118.2
(-3) 		180.8
(-0.4) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 230.1
(3)
P 		133.2
(-2.4)
P 		133.5
(-2.4)
P 		127.4
(-2.8)
M 		123.1
(-3)
A 		124
(-2.9)
A 		107
B 191.7
(3)
M 		119.2
(-0.7)
P 		129.4
(-0.2)
P 		99.7
(-1.7)
A 		73.9
(-3)
A 		129.3
(-0.2)
P 		118
C 189.6
(3)
P 		131.9
(-0.4)
P 		124.1
(-0.8)
A 		119.9
(-1.1)
A 		86.5
(-3)
P 		114.6
(-1.4)
P 		103
avr 203.8
(3) 		128.1
(-1.2) 		129
(-1.1) 		115.7
(-1.8) 		94.5
(-3) 		122.6
(-1.5) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 87.4
(3)
P 		21.9
(-3)
A 		31.4
(-2.1)
A 		30
(-2.3)
P 		66
B 82.1
(3)
P 		53.5
(-0.1)
P 		25.9
(-3)
P 		39.5
(-1.5)
P 		56
C 97.1
(3)
P 		59.8
(-0.1)
P 		42.8
(-1.6)
P 		25.7
(-3)
P 		71
avr 88.9
(3) 		45.1
(-1.6) 		33.4
(-2.8) 		31.7
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 42.4
(1.4)
P 		47.4
(3)
P 		29.1
(-3)
P 		32.3
(-2)
M 		37.2
(-0.3)
A 		30.2
(-2.6)
A 		18
B 66.7
(3)
M 		39.7
(-1)
P 		31.4
(-2.3)
P 		26.4
(-3)
A 		30
(-2.5)
A 		48.2
(0.2)
P 		40
C 70.3
(3)
P 		40.2
(-0.9)
P 		31.6
(-2)
A 		24.1
(-3)
A 		28
(-2.5)
P 		38.3
(-1.2)
P 		46
avr 59.8
(3) 		42.4
(-0.2) 		30.7
(-2.4) 		27.6
(-3) 		31.7
(-2.2) 		38.9
(-0.9) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26913
Sequence Type Exemplar sequence
Representative Public ID AV185003 NCBI
Target Description AV185003_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV185003 /DEF=Caenorhabditis elegans cDNA clone:yk672c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058524 NCBI Caenorhabditis elegans Y37E3.5 (Y37E3.5) mRNA, complete cds. 11/11 None
GENEFINDER00000001215 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2065070:2069051:1 10/11 None
SNAP00000001188 ENSEMBL cdna:SNAP chromosome:CEL140:I:2068392:2069051:1 10/11 None
Y37E3.5 ENSEMBL cdna:known chromosome:CEL140:I:2065751:2069051:1 gene:Y37E3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2068689-2069030(+) 99.67 99.67
Public Domain and Genome References
Ensembl Y37E3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490925 Y37E3.5 [Caenorhabditis elegans] gb|AAK27876.1| Hypothetical protein Y37E3.5 [Caenorhabditis elegans] 1.0E-148
blast CAE74332 Hypothetical protein CBG22045 [Caenorhabditis briggsae] 1.0E-119
blast NP_490925 Y37E3.5 [Caenorhabditis elegans] gb|AAK27876.1| Hypothetical protein Y37E3.5 [Caenorhabditis elegans] 1.0E-72
blast NP_490925 Y37E3.5 [Caenorhabditis elegans] gb|AAK27876.1| Hypothetical protein Y37E3.5 [Caenorhabditis elegans] 6.0E-72
blast CAE74332 Hypothetical protein CBG22045 [Caenorhabditis briggsae] 2.0E-54
blast CAE74332 Hypothetical protein CBG22045 [Caenorhabditis briggsae] 1.0E-53
blast NP_490924 Y37E3.4 [Caenorhabditis elegans] gb|AAK27862.1| Hypothetical protein Y37E3.4 [Caenorhabditis elegans] 1.0E-23
blast XP_545056 PREDICTED: similar to ADP-ribosylation factor-like 2-like 1 isoform 1 [Canis familiaris] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 1.3E-11
Pfam IPR007513 EMBL-EBI Four F5 protein 8.2E-35
Sequence
Target Sequence 
>C. ELEGANS:173106_AT
cctgatcctccatcggatccgaagtccgcgtcggttcatattgaagaaagtccgccgatg
tcgcttgccagctcgacaataccatcagatatcattcagagcacgcctgaaacaggaact
ccacgagatcctgtaaatttttgcagaatctcacaaacaagcacgaagcctgtttcgccg
gaatctaacagtgttaaagaagagccaactatcattctgaaagacaactatttcttgcca
ccaaaagcgcctggtcgacaatatagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGATCCTCCATCGGATCCGAAGT 703 265 16 Antisense
ATCCGAAGTCCGCGTCGGTTCATAT 2 21 32 Antisense
TGAAGAAAGTCCGCCGATGTCGCTT 588 573 57 Antisense
TTGCCAGCTCGACAATACCATCAGA 193 701 80 Antisense
ATCAGATATCATTCAGAGCACGCCT 451 27 99 Antisense
GAGCACGCCTGAAACAGGAACTCCA 651 389 114 Antisense
GAACTCCACGAGATCCTGTAAATTT 302 349 131 Antisense
AACAAGCACGAAGCCTGTTTCGCCG 325 133 171 Antisense
GTTTCGCCGGAATCTAACAGTGTTA 305 449 187 Antisense
CTATTTCTTGCCACCAAAAGCGCCT 146 225 243 Antisense
AAAAGCGCCTGGTCGACAATATAGC 584 131 258 Antisense
Sequence Source Affymetrix Proprietary Database