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[173105_at]

Description AU116653_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU116653 /DEF=Caenorhabditis elegans cDNA clone:yk747c6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 42      6grp_total > 19      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 105.1
(3)
P 		60.9
(-1.3)
A 		90.3
(1.6)
P 		43.7
(-3)
A 		61
B 164.4
(3)
P 		88.4
(-1.8)
P 		89.1
(-1.8)
P 		69.4
(-3)
P 		95
C 50.1
(-3)
P 		78.4
(1.7)
A 		57.1
(-1.8)
P 		86.3
(3)
A 		36
avr 106.5
(3) 		75.9
(-1.6) 		78.8
(-1.2) 		66.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 115.4
(2.6)
P 		76
(-0.6)
P 		86.3
(0.2)
P 		103.7
(1.7)
P 		120.2
(3)
P 		46.5
(-3)
A 		74
B 141.1
(3)
P 		92.3
(0.1)
P 		38.8
(-3)
P 		95.4
(0.3)
P 		137.8
(2.8)
P 		86.8
(-0.2)
P 		102
C 116.8
(3)
P 		97.9
(1.4)
P 		44
(-3)
A 		117
(3)
P 		50.1
(-2.5)
P 		74.7
(-0.5)
P 		73
avr 124.4
(3) 		88.7
(-0.1) 		56.4
(-3) 		105.4
(1.3) 		102.7
(1.1) 		69.3
(-1.9) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 38.3
(3)
P 		13.2
(-1.7)
A 		23.6
(0.2)
P 		6.4
(-3)
A 		32
B 52.4
(3)
P 		21.8
(-1.9)
P 		20.6
(-2.1)
P 		14.8
(-3)
P 		38
C 16.6
(-1.5)
P 		22.5
(3)
A 		19.9
(1)
P 		14.6
(-3)
A 		8
avr 35.8
(3) 		19.2
(-1.2) 		21.4
(-0.6) 		11.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 21.3
(-0.6)
P 		27
(0.8)
P 		18.8
(-1.2)
P 		26.3
(0.6)
P 		36.3
(3)
P 		11.3
(-3)
A 		25
B 49.1
(2.1)
P 		30.7
(-0.3)
P 		9.4
(-3)
P 		25.3
(-1)
P 		56
(3)
P 		32.4
(-0)
P 		47
C 43.3
(3)
P 		29.9
(0.5)
P 		11.2
(-3)
A 		23.5
(-0.7)
P 		16.2
(-2.1)
P 		25
(-0.4)
P 		32
avr 37.9
(3) 		29.2
(0.9) 		13.1
(-3) 		25
(-0.1) 		36.2
(2.6) 		22.9
(-0.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173105_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27586
Sequence Type Exemplar sequence
Representative Public ID AU116653 NCBI
Target Description AU116653_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU116653 /DEF=Caenorhabditis elegans cDNA clone:yk747c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063001(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063001 NCBI Caenorhabditis elegans C44B7.3 (C44B7.3) mRNA, complete cds. 9/11 None
C44B7.3 ENSEMBL cdna:known chromosome:CEL140:II:6860576:6863682:-1 gene:C44B7.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6860571-6860768(-) 65.33 65.33
Public Domain and Genome References
Gene Title
Ensembl C44B7.3
Entrez Gene 174123 Entrez gene
SwissProt Q18592 EMBL-EBI
WormBase CE32328 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68334 Hypothetical protein C44B7.3 [Caenorhabditis elegans] ref|NP_495402.2| C44B7.3 [Caenorhabditis elegans] 0.0
blast CAE65980 Hypothetical protein CBG11169 [Caenorhabditis briggsae] 0.0
blast CAD36481 Hypothetical protein C26D10.5b [Caenorhabditis elegans] ref|NP_001021988.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84283.1| EFF-1B precursor [Caenorhabditis elegans] 5.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495402.2 1 525-559
C44B7.3 1 525-559
Sequence
Target Sequence 
>C. ELEGANS:173105_AT
gaattcatctgattactaaaagctcattcacacggtgaatcctacttactttcctgcatt
ttctcaattgtttccggcttttccattttcaaaatgatcttccacagttgtttctctatt
agagactcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCATCTGATTACTAAAAGCTC 80 325 152 Antisense
TTACTAAAAGCTCATTCACACGGTG 605 665 164 Antisense
TCACACGGTGAATCCTACTTACTTT 247 621 179 Antisense
CACGGTGAATCCTACTTACTTTCCT 580 199 182 Antisense
TACTTTCCTGCATTTTCTCAATTGT 558 645 198 Antisense
TCCTGCATTTTCTCAATTGTTTCCG 17 595 203 Antisense
CATTTTCTCAATTGTTTCCGGCTTT 590 215 208 Antisense
CAAAATGATCTTCCACAGTTGTTTC 69 191 241 Antisense
TGATCTTCCACAGTTGTTTCTCTAT 286 565 246 Antisense
TTCCACAGTTGTTTCTCTATTAGAG 583 699 251 Antisense
GTTGTTTCTCTATTAGAGACTCTTT 74 439 258 Antisense
Sequence Source Affymetrix Proprietary Database