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[173103_s_at]

Description AU115816_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115816 /DEF=Caenorhabditis elegans cDNA clone:yk737b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 45      6grp_total > 73      4grp_total > 09      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1557
1 2 3 4 range
A 390.2
(-3)
P 		468.4
(-2.6)
P 		747.9
(-1.1)
P 		1548.9
(3)
P 		1159
B 291.7
(-3)
P 		712
(-1.4)
P 		587.1
(-1.9)
P 		1848.7
(3)
P 		1557
C 407.1
(-3)
P 		715.7
(-1.6)
P 		822.6
(-1.1)
P 		1698.8
(3)
P 		1292
avr 363
(-3) 		632
(-1.8) 		719.2
(-1.4) 		1698.8
(3) 		1336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3684
1 2 3 4 5 6 range
A 365.2
(-3)
P 		1003.1
(-1.8)
P 		2826.5
(1.8)
P 		3468.6
(3)
P 		2818.1
(1.7)
P 		1685.4
(-0.4)
P 		3103
B 754
(-3)
P 		1247.1
(-2.1)
P 		4048.9
(3)
P 		3284.3
(1.6)
P 		2965.8
(1)
P 		2148.8
(-0.5)
P 		3295
C 498.1
(-3)
P 		1109.2
(-1.7)
P 		1935.1
(-0)
P 		3407.4
(3)
P 		2457.4
(1)
P 		2220.7
(0.6)
P 		2909
avr 539.1
(-3) 		1119.8
(-1.8) 		2936.8
(2.1) 		3386.8
(3) 		2747.1
(1.7) 		2018.3
(0.1) 		2848
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 142.1
(-1.1)
P 		101.7
(-3)
P 		195.5
(1.5)
P 		226.7
(3)
P 		125
B 93
(-3)
P 		175.9
(-1.3)
P 		136
(-2.1)
P 		394
(3)
P 		301
C 134.8
(-3)
P 		205.8
(-0.2)
P 		286.7
(3)
P 		286.4
(3)
P 		152
avr 123.3
(-3) 		161.1
(-1.7) 		206.1
(-0.2) 		302.4
(3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1138
1 2 3 4 5 6 range
A 67.3
(-3)
P 		356.8
(-0.9)
P 		615.5
(1)
P 		879.7
(3)
P 		850.4
(2.8)
P 		410.3
(-0.5)
P 		812
B 262.4
(-3)
P 		415.1
(-2)
P 		983.2
(1.6)
P 		869.9
(0.9)
P 		1205
(3)
P 		801.3
(0.4)
P 		943
C 184.6
(-3)
P 		338.4
(-1.5)
P 		492.5
(0)
P 		685.2
(1.9)
P 		795.2
(3)
P 		743.4
(2.5)
P 		611
avr 171.4
(-3) 		370.1
(-1.5) 		697.1
(1.1) 		811.6
(1.9) 		950.2
(3) 		651.7
(0.7) 		779
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173103_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27564
Sequence Type Exemplar sequence
Representative Public ID AU115816 NCBI
Target Description AU115816_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115816 /DEF=Caenorhabditis elegans cDNA clone:yk737b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073012(11), NM_182380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073012 NCBI Caenorhabditis elegans K07B1.4a (K07B1.4) mRNA, complete cds. 11/11 A 
NM_182380 NCBI Caenorhabditis elegans K07B1.4b (K07B1.4) mRNA, complete cds. 11/11 A 
SNAP00000012084 ENSEMBL cdna:SNAP chromosome:CEL140:V:9332834:9333899:1 11/11 None
GENEFINDER00000012096 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9332834:9333899:1 11/11 None
K07B1.4a ENSEMBL cdna:known chromosome:CEL140:V:9331554:9334105:1 gene:K07B1.4 11/11 A 
K07B1.4b ENSEMBL cdna:known chromosome:CEL140:V:9332834:9333899:1 gene:K07B1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9333742-9334006(+) 88.0 88.0
Public Domain and Genome References
Ensembl K07B1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71373 Hypothetical protein K07B1.4a [Caenorhabditis elegans] ref|NP_505413.1| K07B1.4a [Caenorhabditis elegans] 0.0
blast AAO21379 Hypothetical protein K07B1.4b [Caenorhabditis elegans] ref|NP_872180.1| K07B1.4b [Caenorhabditis elegans] pir||T15251 hypothetical protein K07B1.4 - Caenorhabditis elegans 0.0
blast CAE72154 Hypothetical protein CBG19252 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007130 EMBL-EBI Diacylglycerol acyltransferase 1.0E-126
Pfam IPR007130 EMBL-EBI Diacylglycerol acyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505413.1 1 36-58
NP_872180.1 2 20-42,44-66
K07B1.4a 1 36-58
K07B1.4b 2 20-42,44-66
SNAP00000012084 2 20-42,44-66
GENEFINDER00000012096 2 20-42,44-66
Sequence
Target Sequence 
>C. ELEGANS:173103_S_AT
gtgacaaagacagtgaatccaactcaagaacaaatcgacacacttcatcagacatacatg
gaccgtcttcatgagcttttcgaggagcacaagacaaaatacgatgtctctccaactaca
caacttgttatcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACAAAGACAGTGAATCCAACTC 597 481 32 Antisense
GAATCCAACTCAAGAACAAATCGAC 186 329 46 Antisense
AACAAATCGACACACTTCATCAGAC 328 135 60 Antisense
TCGACACACTTCATCAGACATACAT 647 601 66 Antisense
CAGACATACATGGACCGTCTTCATG 487 205 80 Antisense
CATGGACCGTCTTCATGAGCTTTTC 702 209 88 Antisense
CCGTCTTCATGAGCTTTTCGAGGAG 485 263 94 Antisense
GAGCTTTTCGAGGAGCACAAGACAA 201 389 104 Antisense
CAAAATACGATGTCTCTCCAACTAC 648 189 126 Antisense
GTCTCTCCAACTACACAACTTGTTA 608 467 137 Antisense
CCAACTACACAACTTGTTATCAATT 81 275 143 Antisense
Sequence Source Affymetrix Proprietary Database