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[173102_at] 7TM chemoreceptor, srh family

Description AU115685_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115685 /DEF=Caenorhabditis elegans cDNA clone:yk735e7 : 3prime end, single read.
Cluster 6grp_total > 11      4grp_total > 05      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 32.6
(2.1)
A 		17.6
(-3)
A 		25.7
(-0.2)
A 		35.1
(3)
A 		18
B 29
(0.4)
P 		10.3
(-3)
A 		22.9
(-0.7)
A 		43.7
(3)
P 		33
C 55.9
(-1.1)
A 		16
(-3)
A 		22.1
(-2.7)
A 		144.5
(3)
P 		129
avr 39.2
(-0.5) 		14.6
(-3) 		23.6
(-2.1) 		74.4
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 23.4
(-0)
A 		14.4
(-1.6)
A 		41.1
(3)
A 		6
(-3)
A 		9.1
(-2.5)
A 		7.3
(-2.8)
A 		35
B 5.9
(-3)
A 		22.7
(3)
A 		16.8
(0.9)
A 		5.9
(-3)
A 		9.2
(-1.8)
A 		22.7
(3)
A 		17
C 6.6
(-2.5)
A 		47.9
(3)
A 		3.4
(-2.9)
A 		4.4
(-2.8)
A 		2.7
(-3)
A 		6.2
(-2.5)
A 		45
avr 12
(-1.3) 		28.3
(3) 		20.4
(0.9) 		5.4
(-3) 		7
(-2.6) 		12.1
(-1.2) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 11.9
(3)
A 		3.8
(-3)
A 		6.7
(-0.9)
A 		5.1
(-2)
A 		8
B 9.2
(2.9)
P 		2.5
(-3)
A 		5.3
(-0.5)
A 		9.3
(3)
P 		7
C 18.5
(1.2)
A 		4.6
(-3)
A 		7.7
(-2.1)
A 		24.4
(3)
P 		20
avr 13.2
(3) 		3.6
(-3) 		6.6
(-1.1) 		12.9
(2.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.3
(-0.7)
A 		5.1
(-0.1)
A 		8.9
(3)
A 		1.5
(-3)
A 		2.7
(-2)
A 		1.8
(-2.8)
A 		7
B 2
(-2.7)
A 		7.6
(2.2)
A 		4.1
(-0.8)
A 		1.6
(-3)
A 		3.7
(-1.2)
A 		8.5
(3)
A 		7
C 2.4
(-2.3)
A 		14.6
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2.1
(-2.5)
A 		14
avr 2.9
(-1.8) 		9.1
(3) 		4.6
(-0.5) 		1.3
(-3) 		2.4
(-2.2) 		4.1
(-0.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27561
Sequence Type Exemplar sequence
Representative Public ID AU115685 NCBI
Target Description AU115685_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115685 /DEF=Caenorhabditis elegans cDNA clone:yk735e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071924(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071924 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-21) (srh-21) mRNA, complete cds. 11/11 None
C02E7.2 ENSEMBL cdna:known chromosome:CEL140:V:4926485:4927995:1 gene:C02E7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4927766-4927995(+) 76.33 76.33
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-21
Ensembl C02E7.2
Entrez Gene 178886 Entrez gene
SwissProt O16433 EMBL-EBI
WormBase CE17362 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-180
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 2.0E-98
blast AAC24164 Serpentine receptor, class h protein 23 [Caenorhabditis elegans] ref|NP_504322.1| Serpentine Receptor, class H family member (srh-23) [Caenorhabditis elegans] 5.0E-97
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504325.1 7 13-35,55-77,92-114,127-149,195-217,246-268,273-295
C02E7.2 7 13-35,55-77,92-114,127-149,195-217,246-268,273-295
Sequence
Target Sequence 
>C. ELEGANS:173102_AT
atgttgtcaaaatttggagccagctgccaaaacttggacgttttttttaagagtttttgc
cattgttttattcttgtttgaaacaattttaaaaacgctttcgcgcttttacttctcagc
gaagtttaaattttttggcaaaacttggtttagaagttggctctgttatcacatccaaga
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGTCAAAATTTGGAGCCAGCT 265 47 102 Antisense
GGAGCCAGCTGCCAAAACTTGGACG 457 521 117 Antisense
GCCAGCTGCCAAAACTTGGACGTTT 545 279 120 Antisense
GAGTTTTTGCCATTGTTTTATTCTT 298 399 152 Antisense
TGCCATTGTTTTATTCTTGTTTGAA 215 587 159 Antisense
TTTCGCGCTTTTACTTCTCAGCGAA 208 671 200 Antisense
GCGCTTTTACTTCTCAGCGAAGTTT 162 285 204 Antisense
TCAGCGAAGTTTAAATTTTTTGGCA 169 609 217 Antisense
CTTGGTTTAGAAGTTGGCTCTGTTA 696 217 245 Antisense
GAAGTTGGCTCTGTTATCACATCCA 611 337 254 Antisense
TTGGCTCTGTTATCACATCCAAGAA 99 709 258 Antisense
Sequence Source Affymetrix Proprietary Database