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[173101_at]

Description AU115383_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115383 /DEF=Caenorhabditis elegans cDNA clone:yk732a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 75      6grp_total > 39      4grp_total > 0      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 983
1 2 3 4 range
A 1097.7
(0.1)
P 		657.6
(-3)
P 		1512.4
(3)
P 		995.9
(-0.6)
P 		855
B 908.2
(-2.4)
P 		983.6
(-1.8)
P 		840
(-3)
P 		1583.3
(3)
P 		743
C 1145.5
(-1.7)
P 		1142.2
(-1.8)
P 		1014.4
(-3)
P 		1640.8
(3)
P 		626
avr 1050.5
(-1.5) 		927.8
(-3) 		1122.3
(-0.6) 		1406.7
(3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 803
1 2 3 4 5 6 range
A 688.7
(-1.1)
P 		650.1
(-1.8)
P 		579.6
(-3)
P 		925.8
(3)
P 		922.4
(2.9)
P 		763
(0.2)
P 		346
B 1098.3
(1.1)
P 		932.7
(-0.2)
P 		555.2
(-3)
P 		748.4
(-1.6)
P 		1044.7
(0.7)
P 		1357.9
(3)
P 		803
C 1303
(3)
P 		890.9
(-0.4)
P 		694.7
(-2.1)
P 		922.1
(-0.2)
P 		832.4
(-0.9)
P 		583.4
(-3)
P 		720
avr 1030
(3) 		824.6
(0.1) 		609.8
(-3) 		865.4
(0.6) 		933.2
(1.6) 		901.4
(1.2) 		420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 399.7
(3)
P 		142.8
(-3)
P 		395.4
(2.9)
P 		145.8
(-2.9)
P 		257
B 289.6
(1)
P 		242.9
(-1)
P 		194.7
(-3)
P 		337.4
(3)
P 		143
C 379.2
(3)
P 		328.4
(0)
P 		353.5
(1.5)
P 		276.7
(-3)
P 		103
avr 356.2
(3) 		238
(-3) 		314.5
(0.9) 		253.3
(-2.2) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 127
(-3)
P 		231.2
(1.1)
P 		126.2
(-3)
P 		234.8
(1.3)
P 		278.4
(3)
P 		185.8
(-0.7)
P 		152
B 382.1
(1)
P 		310.4
(-0.2)
P 		134.8
(-3)
P 		198.2
(-2)
P 		424.4
(1.7)
P 		506.4
(3)
P 		372
C 483
(3)
P 		271.8
(-1.1)
P 		176.8
(-3)
P 		185.4
(-2.8)
P 		269.4
(-1.2)
P 		195.3
(-2.6)
P 		306
avr 330.7
(3) 		271.1
(1.1) 		145.9
(-3) 		206.1
(-1) 		324.1
(2.8) 		295.8
(1.9) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27552
Sequence Type Exemplar sequence
Representative Public ID AU115383 NCBI
Target Description AU115383_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115383 /DEF=Caenorhabditis elegans cDNA clone:yk732a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU115383
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU115383 AU115383_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AU115383 /DEF=Caenorhabditis elegans cDNA clone:yk732a4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063587 8/11 Cross Hyb Matching Probes None
D2013.7 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9333481-9333725(+) 81.0 81.0
Sequence
Target Sequence 
>C. ELEGANS:173101_AT
gtgtcggcctaatttttgttctccacactataaactcgtttttgtcccgattttttctaa
tatatttttttttggttggcgtttgttgtttttctttccatccatttatatcatccttct
tccaattcttaaaatatttctccccatgttttctatctatctgccctttttttttaatgg
attgtctgaaattagtatttgttgttttctttatcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCGGCCTAATTTTTGTTCTCCA 344 485 45 Antisense
CCTAATTTTTGTTCTCCACACTATA 618 265 52 Antisense
TTCTCCACACTATAAACTCGTTTTT 588 687 63 Antisense
TTTGTCCCGATTTTTTCTAATATAT 196 663 85 Antisense
TCTTTCCATCCATTTATATCATCCT 457 615 137 Antisense
TCCATCCATTTATATCATCCTTCTT 450 591 141 Antisense
ATCATCCTTCTTCCAATTCTTAAAA 502 29 154 Antisense
ATTCTTAAAATATTTCTCCCCATGT 457 11 169 Antisense
TATCTATCTGCCCTTTTTTTTTAAT 672 659 198 Antisense
TCTGCCCTTTTTTTTTAATGGATTG 337 609 204 Antisense
AGTATTTGTTGTTTTCTTTATCCTG 141 63 238 Antisense
Sequence Source Affymetrix Proprietary Database