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[173099_at]

Description AV200034_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200034 /DEF=Caenorhabditis elegans cDNA clone:yk555f8 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 11.2
(-2.6)
A 		7.4
(-3)
A 		7.8
(-3)
A 		61.6
(3)
A 		54
B 21.4
(3)
A 		2.4
(-3)
A 		3.5
(-2.7)
A 		4.4
(-2.4)
A 		19
C 4.8
(-0.4)
A 		8.3
(3)
A 		2.2
(-3)
A 		6.5
(1.2)
A 		6
avr 12.5
(-0.6) 		6
(-2.5) 		4.5
(-3) 		24.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 2.2
(-3)
A 		4
(-2.8)
A 		4.2
(-2.7)
A 		3.6
(-2.8)
A 		36.5
(1.8)
A 		45.5
(3)
A 		43
B 6.9
(-2.4)
A 		11.3
(-1.9)
A 		2.5
(-3)
A 		8.1
(-2.3)
A 		30
(0.5)
A 		50.1
(3)
A 		48
C 2.6
(-3)
A 		9.6
(-2.1)
A 		13.7
(-1.6)
A 		6.3
(-2.5)
A 		4
(-2.8)
A 		48.7
(3)
A 		46
avr 3.9
(-3) 		8.3
(-2.4) 		6.8
(-2.6) 		6
(-2.7) 		23.5
(-0.3) 		48.1
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.1
(-1)
A 		1.6
(-3)
A 		2
(-2.7)
A 		9
(3)
A 		7
B 6.8
(3)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		0.9
(-2.7)
A 		6
C 1.6
(0)
A 		2.4
(3)
A 		0.8
(-3)
A 		1.1
(-1.9)
A 		2
avr 4.2
(3) 		1.5
(-2.4) 		1.2
(-3) 		3.7
(2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.4
(-2.4)
A 		0.9
(-2.7)
A 		0.9
(-2.7)
A 		11
(2.9)
A 		11.1
(3)
A 		11
B 2.4
(-2.4)
A 		3.8
(-1.9)
A 		0.6
(-3)
A 		2.1
(-2.5)
A 		12.2
(0.8)
A 		18.7
(3)
A 		18
C 1
(-3)
A 		2.9
(-2.3)
A 		3.5
(-2)
A 		1.3
(-2.9)
A 		1.3
(-2.9)
A 		16.3
(3)
A 		15
avr 1.3
(-3) 		2.7
(-2.4) 		1.7
(-2.8) 		1.4
(-3) 		8.2
(-0.1) 		15.4
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26979
Sequence Type Exemplar sequence
Representative Public ID AV200034 NCBI
Target Description AV200034_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV200034 /DEF=Caenorhabditis elegans cDNA clone:yk555f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026577 NCBI Caenorhabditis elegans Y37F4.5 (Y37F4.5) mRNA, complete cds. 11/11 None
SNAP00000026109 ENSEMBL cdna:SNAP chromosome:CEL140:I:10869384:10874726:-1 11/11 None
GENEFINDER00000026114 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10869384:10871578:-1 11/11 None
Y37F4.5 ENSEMBL cdna:known chromosome:CEL140:I:10869384:10870656:-1 gene:Y37F4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10869322-10869719(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37F4.5
Entrez Gene 246002 Entrez gene
SwissProt Q75KS2 EMBL-EBI
WormBase CE36032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021748 Y37F4.5 [Caenorhabditis elegans] gb|AAR12980.1| Hypothetical protein Y37F4.5 [Caenorhabditis elegans] 1.0E-142
blast NP_001021748 Y37F4.5 [Caenorhabditis elegans] gb|AAR12980.1| Hypothetical protein Y37F4.5 [Caenorhabditis elegans] 1.0E-141
blast NP_001021750 Y37F4.7 [Caenorhabditis elegans] gb|AAR12981.1| Hypothetical protein Y37F4.7 [Caenorhabditis elegans] 1.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000026109 1 362-384
GENEFINDER00000026114 1 40-62
Sequence
Target Sequence 
>C. ELEGANS:173099_AT
ggtagcgactgcacagattgagtttgcactctatgtttgcttgaagttggttgcagatga
aaacacgttcacaatgatcccgatcgctgcgttggaaactgcatggatgaaatcttggat
tgagaatcacgacattttccagaaattctatacatctacgcgattgacttgtccagatga
cagaagagaacactggtacaaagcgggactacaaaaattggctgaaattcgagaaactct
gcaggaaccagtcgcttgcaagtcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGCGACTGCACAGATTGAGTTT 693 503 14 Antisense
GAGTTTGCACTCTATGTTTGCTTGA 218 399 33 Antisense
AACACGTTCACAATGATCCCGATCG 537 133 75 Antisense
GATCCCGATCGCTGCGTTGGAAACT 273 417 89 Antisense
ATCGCTGCGTTGGAAACTGCATGGA 356 37 96 Antisense
GGATTGAGAATCACGACATTTTCCA 168 509 130 Antisense
AGAAATTCTATACATCTACGCGATT 29 73 154 Antisense
CATCTACGCGATTGACTTGTCCAGA 382 213 166 Antisense
GAGAACACTGGTACAAAGCGGGACT 600 391 199 Antisense
GAAACTCTGCAGGAACCAGTCGCTT 320 357 246 Antisense
GGAACCAGTCGCTTGCAAGTCAAAC 287 531 257 Antisense
Sequence Source Affymetrix Proprietary Database