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[173097_at]

Description CEK015A1R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27600 /DEF=C.elegans cDNA clone yk15a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 17      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 07      4grp_total > 42      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 148.3
(3)
P 		121.1
(-3)
P 		125.9
(-1.9)
P 		135.3
(0.1)
P 		27
B 93.4
(-3)
P 		147.5
(3)
P 		137
(1.8)
P 		143.8
(2.6)
P 		54
C 139.2
(-3)
P 		238.3
(3)
P 		181.8
(-0.4)
P 		163.4
(-1.5)
P 		99
avr 127
(-3) 		169
(3) 		148.2
(0) 		147.5
(-0.1) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 157.8
(3)
P 		86.8
(-1.9)
P 		133.8
(1.3)
P 		71.3
(-3)
P 		91.3
(-1.6)
P 		93
(-1.5)
P 		87
B 241.8
(3)
P 		168.6
(0.1)
P 		90.8
(-3)
P 		113.4
(-2.1)
P 		110.6
(-2.2)
P 		95.9
(-2.8)
P 		151
C 231
(3)
P 		138.4
(-0.3)
P 		144.8
(-0.1)
P 		62.1
(-3)
P 		135.3
(-0.4)
P 		117.3
(-1)
P 		169
avr 210.2
(3) 		131.3
(-0.7) 		123.1
(-1.1) 		82.3
(-3) 		112.4
(-1.6) 		102.1
(-2.1) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 54
(3)
P 		26.3
(-1.9)
P 		32.9
(-0.7)
P 		19.8
(-3)
P 		34
B 29.8
(-3)
P 		36.4
(3)
P 		31.8
(-1.2)
P 		30.6
(-2.3)
P 		7
C 46.1
(-0.3)
P 		68.5
(3)
P 		63.4
(2.3)
P 		27.6
(-3)
P 		41
avr 43.3
(2.9) 		43.7
(3) 		42.7
(2.7) 		26
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 29.1
(2.2)
P 		30.9
(3)
P 		29.1
(2.2)
P 		18.1
(-3)
P 		27.6
(1.5)
P 		22.7
(-0.8)
P 		13
B 84.1
(3)
P 		56.1
(0.3)
P 		22
(-3)
P 		30
(-2.2)
P 		44.9
(-0.8)
P 		35.8
(-1.7)
P 		62
C 85.6
(3)
P 		42.2
(-0.6)
P 		36.8
(-1)
P 		12.5
(-3)
P 		43.8
(-0.4)
P 		39.3
(-0.8)
P 		73
avr 66.3
(3) 		43.1
(-0) 		29.3
(-1.8) 		20.2
(-3) 		38.8
(-0.6) 		32.6
(-1.4) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27364
Sequence Type Exemplar sequence
Representative Public ID CEK015A1R NCBI
Target Description CEK015A1R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27600 /DEF=C.elegans cDNA clone yk15a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170935(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170935 NCBI Caenorhabditis elegans Y105E8A.3 (Y105E8A.3) mRNA, complete cds. 10/11 A 
Y105E8A.3 ENSEMBL cdna:known chromosome:CEL140:I:14366654:14375699:1 gene:Y105E8A.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013320 4/11 Cross Hyb Matching Probes None
GENEFINDER00000013487 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14374592-14375629(+) 98.44 99.22
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.3
Entrez Gene 173299 Entrez gene
SwissProt Q8WQB6 EMBL-EBI
WormBase CE32233 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12368.1.S1_S_AT similar to zinc transporter ZTL1 isoform 1 cfa
CHICKEN:GGA.8469.1.S1_AT solute carrier family 30 (zinc transporter), member 5 gga
CHICKEN:GGAAFFX.11883.1.S1_AT solute carrier family 30 (zinc transporter), member 5 gga
HG-U133_PLUS_2:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A_2:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HU35KSUBA:RC_AA598723_AT solute carrier family 30 (zinc transporter), member 5 hs
HU35KSUBB:RC_R77771_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A_2:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:G13443011_3P_X_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:G13443011_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS2AFFX.1.207.S1_3P_S_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS2AFFX.1.207.S1_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS.165490.0.A1_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS.129445.2.S1_3P_A_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:1555334_3P_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:1555334_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:232432_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133B:232432_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:243166_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133B:243166_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95B:59029_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:65193_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:66873_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95D:91769_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:58138_AT Solute carrier family 30 (zinc transporter), member 5 hs
RG-U34C:RC_AI146110_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
RAE230A:1373821_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
RAT230_2:1373821_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD21657 Hypothetical protein Y105E8A.3 [Caenorhabditis elegans] ref|NP_740931.2| Y105E8A.3 [Caenorhabditis elegans] 0.0
blast CAE64126 Hypothetical protein CBG08742 [Caenorhabditis briggsae] 0.0
blast NP_001015911 solute carrier family 30 (zinc transporter), member 5 [Xenopus tropicalis] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 1.1E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740931.2 16 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611
Y105E8A.3 16 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611
Sequence
Target Sequence 
>C. ELEGANS:173097_AT
tcggaatatcctgaagagcacctggagccaacccactcanctgacaagttgagaaaaaga
catttgcacacaggatacaacaagtgtgtcctggatataaagctggttatacggtagtcc
gcggaagtgtgataagagagaagaagcatgatcattcacatcaccacgggcattcacacg
acgatcacagcggacatcatcattaatttattccagtagtattttttttcttctgaaatt
cacttatttatagtcatttttcccctttttttctagtgtctttgctttacatttcgggat
aatttattgtgtttttgtgtgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGAATATCCTGAAGAGCACCTGG 318 605 15 Antisense
AAGACATTTGCACACAGGATACAAC 250 153 71 Antisense
GATACAACAAGTGTGTCCTGGATAT 482 423 88 Antisense
GTGTGTCCTGGATATAAAGCTGGTT 573 481 98 Antisense
AAAGCTGGTTATACGGTAGTCCGCG 48 125 113 Antisense
GACATCATCATTAATTTATTCCAGT 244 371 207 Antisense
TCCAGTAGTATTTTTTTTCTTCTGA 113 591 226 Antisense
TCACTTATTTATAGTCATTTTTCCC 471 627 254 Antisense
TTTTTTCTAGTGTCTTTGCTTTACA 396 675 281 Antisense
GTGTCTTTGCTTTACATTTCGGGAT 136 487 290 Antisense
GATAATTTATTGTGTTTTTGTGTGT 139 421 312 Antisense
Sequence Source Affymetrix Proprietary Database