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[173096_at]

Description CEK015B8R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27608 /DEF=C.elegans cDNA clone yk15b8 : 3prime end, single read.
Cluster 6grp_total > 20      4grp_total > 52      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 267.2
(0.6)
M 		438.1
(3)
P 		261.4
(0.5)
M 		10.6
(-3)
A 		428
B 322.9
(2.6)
P 		344
(3)
M 		329
(2.7)
M 		8.7
(-3)
A 		335
C 268.8
(0.3)
P 		488.5
(3)
M 		229.4
(-0.2)
P 		7.5
(-3)
A 		481
avr 286.3
(1) 		423.5
(3) 		273.3
(0.8) 		8.9
(-3) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 170.2
(0.7)
A 		273.2
(3)
M 		149.8
(0.2)
P 		91.2
(-1.1)
A 		207.7
(1.5)
P 		5.8
(-3)
A 		267
B 197.7
(3)
P 		135.8
(1.1)
A 		154.6
(1.7)
A 		104
(0.1)
A 		30.1
(-2.2)
A 		5.6
(-3)
A 		192
C 3.5
(-3)
A 		190.9
(2.1)
M 		145.8
(0.9)
A 		169.8
(1.5)
A 		223
(3)
P 		3
(-3)
A 		220
avr 123.8
(0.7) 		200
(3) 		150.1
(1.5) 		121.7
(0.6) 		153.6
(1.6) 		4.8
(-3) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 97.3
(3)
M 		95.1
(2.9)
P 		68.3
(1.2)
M 		1.6
(-3)
A 		96
B 103
(3)
P 		85
(1.9)
M 		76.2
(1.4)
M 		1.8
(-3)
A 		101
C 89
(0.8)
P 		140.4
(3)
M 		79.9
(0.4)
P 		1.3
(-3)
A 		139
avr 96.4
(2.4) 		106.8
(3) 		74.8
(1.2) 		1.6
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 31.4
(-1.1)
A 		97.2
(3)
M 		32.6
(-1)
P 		23.1
(-1.6)
A 		62.7
(0.8)
P 		1.4
(-3)
A 		96
B 68.8
(3)
P 		45.2
(0.9)
A 		37.5
(0.2)
A 		27.5
(-0.7)
A 		12.2
(-2.1)
A 		2.1
(-3)
A 		67
C 1.3
(-3)
A 		58.2
(1.8)
M 		37.1
(0)
A 		34.2
(-0.2)
A 		72.1
(3)
P 		1
(-3)
A 		71
avr 33.8
(-0) 		66.9
(3) 		35.7
(0.1) 		28.3
(-0.5) 		49
(1.4) 		1.5
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27365
Sequence Type Exemplar sequence
Representative Public ID CEK015B8R NCBI
Target Description CEK015B8R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27608 /DEF=C.elegans cDNA clone yk15b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171275
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08D12.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:1720371:1723061:1 gene:K08D12.6 None
K08D12.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:1720788:1723061:1 gene:K08D12.6 None
SNAP00000039173 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1720875:1722932:1 None
NM_171275 NCBI Caenorhabditis elegans K08D12.6 (K08D12.6) mRNA, complete cds. None
GENEFINDER00000039177 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1720875:1722932:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1720857-1723062(+) 75.22 86.09
Public Domain and Genome References
Gene Title
Ensembl K08D12.6
Entrez Gene 176980 Entrez gene
SwissProt Q8MXU8 EMBL-EBI
WormBase CE21047 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98004 Hypothetical protein K08D12.6 [Caenorhabditis elegans] ref|NP_741325.1| K08D12.6 [Caenorhabditis elegans] 3.0E-74
Sequence
Target Sequence 
>C. ELEGANS:173096_AT
gccgctctaagaactaagtggatccccggcctgcaggaattcggcacggagtgtccatca
acccacaaacaaacatggaggtgtttgtattcctctccatcgttgccatcgcttcttctc
gctacgtcgtgaagagaaatgcttatggagatgagcaagtgactccagctccagcagctt
ctgcacccagccccagccgacgctccagtagaacaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCTCTAAGAACTAAGTGGATCC 653 283 19 Antisense
TAAGAACTAAGTGGATCCCCGGCCT 447 637 26 Antisense
GAATTCGGCACGGAGTGTCCATCAA 272 325 55 Antisense
AATTCGGCACGGAGTGTCCATCAAC 252 175 56 Antisense
TGTCCATCAACCCACAAACAAACAT 106 557 70 Antisense
AACCCACAAACAAACATGGAGGTGT 112 147 78 Antisense
GGAGGTGTTTGTATTCCTCTCCATC 314 517 95 Antisense
CTTCTTCTCGCTACGTCGTGAAGAG 456 221 130 Antisense
TCGCTACGTCGTGAAGAGAAATGCT 344 597 137 Antisense
GAGATGAGCAAGTGACTCCAGCTCC 143 397 166 Antisense
AGCCGACGCTCCAGTAGAACAAGCC 548 83 213 Antisense
Sequence Source Affymetrix Proprietary Database