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[173094_s_at] C1R/C1S-like domain

Description CEK013E2R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27554 /DEF=C.elegans cDNA clone yk13e2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 45      4grp_high_8_8 > 44      6grp_total > 11      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 106.8
(0.4)
P 		147.3
(3)
P 		52.5
(-3)
A 		130.5
(1.9)
A 		95
B 107.5
(1.2)
P 		114.8
(2.2)
A 		120.2
(3)
P 		77.5
(-3)
P 		43
C 155.1
(3)
P 		138.6
(1.1)
P 		105.7
(-2.8)
P 		104.1
(-3)
P 		51
avr 123.1
(1.5) 		133.6
(3) 		92.8
(-3) 		104
(-1.4) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 86.7
(-1.1)
A 		101.1
(1.7)
P 		107.5
(3)
A 		77.4
(-3)
A 		96.8
(0.9)
P 		95.5
(0.6)
M 		30
B 113.8
(0)
P 		119.4
(3)
P 		108.1
(-3)
A 		117
(1.7)
P 		115.5
(0.9)
P 		114.7
(0.5)
P 		11
C 80.6
(-0.5)
P 		121.6
(3)
P 		83.7
(-0.2)
P 		51.1
(-3)
A 		78
(-0.7)
P 		62.7
(-2)
A 		71
avr 93.7
(-0.8) 		114
(3) 		99.8
(0.4) 		81.8
(-3) 		96.8
(-0.2) 		91
(-1.3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 38.9
(3)
P 		32
(1.4)
P 		13.7
(-3)
A 		19.1
(-1.7)
A 		25
B 34.3
(3)
P 		28.4
(1)
A 		27.9
(0.8)
P 		16.5
(-3)
P 		18
C 51.3
(3)
P 		39.8
(1)
P 		36.8
(0.4)
P 		17.6
(-3)
P 		34
avr 41.5
(3) 		33.4
(1) 		26.1
(-0.9) 		17.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 16
(-3)
A 		36
(3)
P 		23.4
(-0.8)
A 		19.6
(-1.9)
A 		29.2
(1)
P 		23.2
(-0.8)
M 		20
B 39.6
(0.9)
P 		39.7
(0.9)
P 		26.2
(-3)
A 		31
(-1.6)
P 		46.9
(3)
P 		42.8
(1.8)
P 		21
C 29.9
(1.4)
P 		37.1
(3)
P 		21.3
(-0.5)
P 		10.3
(-3)
A 		25.3
(0.4)
P 		21
(-0.6)
A 		27
avr 28.5
(-0.2) 		37.6
(3) 		23.6
(-1.9) 		20.3
(-3) 		33.8
(1.7) 		29
(0) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173094_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27359
Sequence Type Exemplar sequence
Representative Public ID CEK013E2R NCBI
Target Description CEK013E2R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27554 /DEF=C.elegans cDNA clone yk13e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077944 NCBI Caenorhabditis elegans F16B12.1 (F16B12.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000024905 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14085490:14095410:1 11/11 None
SNAP00000024896 ENSEMBL cdna:SNAP chromosome:CEL140:X:14088311:14089616:1 11/11 None
F16B12.1 ENSEMBL cdna:known chromosome:CEL140:X:14085428:14089501:1 gene:F16B12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14089211-14089633(+) 90.91 90.91
Public Domain and Genome References
Gene Title C1R/C1S-like domain
Ensembl F16B12.1
Entrez Gene 181519 Entrez gene
SwissProt Q93518 EMBL-EBI
WormBase CE35488 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02962 Hypothetical protein F16B12.1 [Caenorhabditis elegans] ref|NP_510345.2| F16B12.1 [Caenorhabditis elegans] 0.0
blast CAB02963 Hypothetical protein F16B12.2 [Caenorhabditis elegans] ref|NP_510346.1| Delta/Serrate/Lag-2 domain family member (dsl-4) [Caenorhabditis elegans] 1.0E-155
blast CAB02962 Hypothetical protein F16B12.1 [Caenorhabditis elegans] ref|NP_510345.2| F16B12.1 [Caenorhabditis elegans] 1.0E-126
blast CAE63033 Hypothetical protein CBG07297 [Caenorhabditis briggsae] 7.0E-99
blast CAE63033 Hypothetical protein CBG07297 [Caenorhabditis briggsae] 4.0E-96
blast CAE70670 Hypothetical protein CBG17378 [Caenorhabditis briggsae] 9.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 8.6E-5
Pfam IPR000859 EMBL-EBI CUB 6.1E-15
Pfam IPR006209 EMBL-EBI EGF-like domain 4.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.9E-7
Pfam IPR000859 EMBL-EBI CUB 6.1E-15
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.0E-7
Pfam IPR000859 EMBL-EBI CUB 7.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510345.2 1 609-631
F16B12.1 1 609-631
GENEFINDER00000024905 1 625-647
SNAP00000024896 1 215-237
Sequence
Target Sequence 
>C. ELEGANS:173094_S_AT
cccacgaggtcctgaatatctcatcgtcttctgttctcataatgttccaaacccgatcag
agtattagtgacccgaggatttcatatcncagcacctgcccattatccccgagactaata
tgatggagataattcactcacatatgcactcattgctcttgccctcgttttcattattgc
aattttgctggtgaaaaatgtcnccgaaaagtaccttncgaaagatnctcttcccattcc
aattgcacccggggcaggtggtggagataattttg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCACGAGGTCCTGAATATCTCATC 103 257 26 Antisense
GAGGTCCTGAATATCTCATCGTCTT 673 401 31 Antisense
TGAATATCTCATCGTCTTCTGTTCT 193 577 38 Antisense
CATCGTCTTCTGTTCTCATAATGTT 494 211 47 Antisense
GGAGATAATTCACTCACATATGCAC 84 519 150 Antisense
AATTCACTCACATATGCACTCATTG 150 177 156 Antisense
CACATATGCACTCATTGCTCTTGCC 586 195 164 Antisense
TCTTGCCCTCGTTTTCATTATTGCA 100 619 182 Antisense
GCCCTCGTTTTCATTATTGCAATTT 426 285 186 Antisense
TTCATTATTGCAATTTTGCTGGTGA 501 689 195 Antisense
GGGGCAGGTGGTGGAGATAATTTTG 685 497 276 Antisense
Sequence Source Affymetrix Proprietary Database