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[173093_s_at]

Description CEK013E6R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27356 /DEF=C.elegans cDNA clone yk13e6 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 25      6grp_total > 01      4grp_total > 59      6grp_cgc > 04      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 221.7
(2.3)
P 		234.6
(2.7)
P 		243.4
(3)
P 		67.9
(-3)
A 		176
B 232.8
(1.8)
P 		279.5
(3)
P 		190.7
(0.6)
P 		54.2
(-3)
A 		225
C 207.4
(0.3)
P 		351.2
(3)
P 		260.8
(1.3)
P 		35.3
(-3)
A 		316
avr 220.6
(1.3) 		288.4
(3) 		231.6
(1.6) 		52.5
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 103.9
(-2.1)
M 		252.9
(3)
P 		129
(-1.2)
P 		76.9
(-3)
P 		117.8
(-1.6)
P 		139.9
(-0.9)
P 		176
B 184
(3)
P 		162.6
(1.7)
P 		82.6
(-3)
A 		98.6
(-2.1)
P 		165.2
(1.9)
P 		116.4
(-1)
P 		101
C 185.8
(2.9)
P 		187.4
(3)
P 		93
(-3)
P 		125
(-1)
A 		107.3
(-2.1)
P 		148.2
(0.5)
P 		94
avr 157.9
(0.4) 		201
(3) 		101.5
(-2.9) 		100.2
(-3) 		130.1
(-1.2) 		134.8
(-0.9) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 80.7
(3)
P 		50.9
(0.5)
P 		63.6
(1.6)
P 		9.9
(-3)
A 		71
B 74.2
(3)
P 		69
(2.5)
P 		44.2
(0.1)
P 		11.5
(-3)
A 		63
C 68.7
(1)
P 		101
(3)
P 		90.9
(2.4)
P 		5.9
(-3)
A 		95
avr 74.5
(3) 		73.6
(2.9) 		66.2
(2.2) 		9.1
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 19.2
(-3)
M 		89.9
(3)
P 		28.1
(-2.2)
P 		19.5
(-3)
P 		35.5
(-1.6)
P 		34.1
(-1.7)
P 		71
B 64
(2.6)
P 		54.1
(1.3)
P 		20.1
(-3)
A 		26.1
(-2.2)
P 		67.1
(3)
P 		43.4
(-0)
P 		47
C 68.9
(3)
P 		57.2
(1.4)
P 		23.7
(-3)
P 		25.1
(-2.8)
A 		34.7
(-1.5)
P 		49.6
(0.4)
P 		45
avr 50.7
(0.7) 		67.1
(3) 		24
(-2.9) 		23.6
(-3) 		45.8
(0.1) 		42.4
(-0.4) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173093_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27360
Sequence Type Exemplar sequence
Representative Public ID CEK013E6R NCBI
Target Description CEK013E6R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27356 /DEF=C.elegans cDNA clone yk13e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078145(11), NM_078146(11), NM_078144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078145 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. 11/11 A 
NM_078146 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. 11/11 A 
NM_078144 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. 11/11 A 
SNAP00000018944 ENSEMBL cdna:SNAP chromosome:CEL140:X:15409259:15413490:-1 11/11 None
GENEFINDER00000018948 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15409259:15413738:-1 11/11 None
F39D8.1a ENSEMBL cdna:known chromosome:CEL140:X:15409092:15413538:-1 gene:F39D8.1 11/11 A 
F39D8.1c ENSEMBL cdna:known chromosome:CEL140:X:15409094:15413302:-1 gene:F39D8.1 11/11 A 
F39D8.1b ENSEMBL cdna:known chromosome:CEL140:X:15409259:15415410:-1 gene:F39D8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15409090-15409552(-) 90.26 90.26
Public Domain and Genome References
Ensembl F39D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93660 Hypothetical protein F39D8.1a [Caenorhabditis elegans] ref|NP_510546.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
blast CAA93662 Hypothetical protein F39D8.1c [Caenorhabditis elegans] ref|NP_510547.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
blast CAA93661 Hypothetical protein F39D8.1b [Caenorhabditis elegans] ref|NP_510545.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173093_S_AT
ctggtttcacacctcaatacggagacatgaatacacaatacgggggggtacgcatctagc
acagcgtcatcgaacccacaatttgatcaacccagtgctgatcagcagcagccacaaaac
tcagcacgaagcaacttgcaagttcttatcgcaacatcattgctgatgatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTTTCACACCTCAATACGGAGA 375 239 52 Antisense
GTTTCACACCTCAATACGGAGACAT 630 449 55 Antisense
ATACGGAGACATGAATACACAATAC 427 7 68 Antisense
GCGTCATCGAACCCACAATTTGATC 598 291 115 Antisense
GAACCCACAATTTGATCAACCCAGT 181 345 123 Antisense
GATCAACCCAGTGCTGATCAGCAGC 527 421 136 Antisense
CCCAGTGCTGATCAGCAGCAGCCAC 14 257 142 Antisense
TCAGCAGCAGCCACAAAACTCAGCA 347 625 153 Antisense
GAAGCAACTTGCAAGTTCTTATCGC 420 339 179 Antisense
GCAAGTTCTTATCGCAACATCATTG 373 321 189 Antisense
ATCGCAACATCATTGCTGATGATCT 624 35 199 Antisense
Sequence Source Affymetrix Proprietary Database