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[173092_at]

Description CEK013E6R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27356 /DEF=C.elegans cDNA clone yk13e6 : 3prime end, single read.
Cluster 6grp_total > 18      4grp_total > 52      6grp_cgc > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 178
(2.4)
P 		132.3
(-3)
P 		183.4
(3)
P 		141.1
(-2)
A 		51
B 108.6
(-0.9)
A 		219.9
(3)
P 		97
(-1.3)
A 		49.6
(-3)
A 		170
C 210.2
(3)
A 		207.5
(2.8)
P 		143
(-0.9)
P 		107.2
(-3)
A 		103
avr 165.6
(1.6) 		186.6
(3) 		141.1
(-0.1) 		99.3
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 113.7
(-3)
A 		136.8
(-0.9)
A 		118.5
(-2.6)
A 		136.6
(-0.9)
A 		141
(-0.6)
P 		180.6
(3)
A 		67
B 174
(3)
A 		133
(0.5)
M 		76.9
(-3)
A 		121.3
(-0.3)
A 		122.1
(-0.2)
P 		116.3
(-0.6)
A 		97
C 245.3
(3)
M 		162.3
(0.4)
A 		151.5
(0)
A 		140.4
(-0.3)
M 		141.5
(-0.3)
A 		55.7
(-3)
A 		190
avr 177.7
(3) 		144
(-0.3) 		115.6
(-3) 		132.8
(-1.3) 		134.9
(-1.1) 		117.5
(-2.8) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 64.8
(3)
P 		28.7
(-1.9)
P 		47.9
(0.7)
P 		20.7
(-3)
A 		44
B 34.6
(0.3)
A 		54.3
(3)
P 		22.5
(-1.4)
A 		10.6
(-3)
A 		44
C 69.6
(3)
A 		59.7
(1.8)
P 		49.8
(0.7)
P 		18.1
(-3)
A 		52
avr 56.3
(3) 		47.6
(1.7) 		40.1
(0.6) 		16.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 21
(-3)
A 		48.7
(3)
A 		25.8
(-2)
A 		34.6
(-0.1)
A 		42.5
(1.7)
P 		44
(2)
A 		28
B 60.5
(3)
A 		44.3
(0.7)
M 		18.7
(-3)
A 		32.1
(-1.1)
A 		49.6
(1.4)
P 		43.4
(0.5)
A 		42
C 90.9
(3)
M 		49.5
(-0.4)
A 		38.6
(-1.3)
A 		28.2
(-2.2)
M 		45.8
(-0.7)
A 		18.7
(-3)
A 		72
avr 57.5
(3) 		47.5
(1) 		27.7
(-3) 		31.6
(-2.2) 		46
(0.7) 		35.4
(-1.4) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27360
Sequence Type Exemplar sequence
Representative Public ID CEK013E6R NCBI
Target Description CEK013E6R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27356 /DEF=C.elegans cDNA clone yk13e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078145, NM_078146, NM_078144
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078144 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. A 
F39D8.1a ENSEMBL cdna:known chromosome:CEL140:X:15409092:15413538:-1 gene:F39D8.1 A 
F39D8.1c ENSEMBL cdna:known chromosome:CEL140:X:15409094:15413302:-1 gene:F39D8.1 A 
F39D8.1b ENSEMBL cdna:known chromosome:CEL140:X:15409259:15415410:-1 gene:F39D8.1 A 
NM_078146 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. A 
NM_078145 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) (pqn-36) mRNA, complete cds. A 
SNAP00000018944 ENSEMBL cdna:SNAP chromosome:CEL140:X:15409259:15413490:-1 None
GENEFINDER00000018948 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15409259:15413738:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15409090-15409552(-) 90.26 90.26
Public Domain and Genome References
Ensembl F39D8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93660 Hypothetical protein F39D8.1a [Caenorhabditis elegans] ref|NP_510546.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
blast CAA93662 Hypothetical protein F39D8.1c [Caenorhabditis elegans] ref|NP_510547.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
blast CAA93661 Hypothetical protein F39D8.1b [Caenorhabditis elegans] ref|NP_510545.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-36) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173092_AT
caatgggacaagccatccaaaccggggatgctggtttcacacctcaatacggagacatga
atacacaatacgggggggtacgcatctagcacagcgtcatcgaacccacaatttgatcaa
cccagtgctgatcagcagcagccacaaaactcagcacgaagcaacttgcaagttcttatc
gcaacatcattgctgatgatcttcgtgtggtgattattttattagttcgatgatctaaat
ttttttgctcaaatcttttcattttcttctctgtatatttgaggcctagccaaaccactt
tccccgagtttttcgttcacatgaactaacttgccttcacacatttacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGGGACAAGCCATCCAAACCGG 697 181 22 Antisense
TCCAAACCGGGGATGCTGGTTTCAC 645 223 37 Antisense
ACACAATACGGGGGGGTACGCATCT 18 99 84 Antisense
GTGGTGATTATTTTATTAGTTCGAT 469 489 228 Antisense
AGTTCGATGATCTAAATTTTTTTGC 306 63 245 Antisense
GCTCAAATCTTTTCATTTTCTTCTC 692 301 268 Antisense
TTTCATTTTCTTCTCTGTATATTTG 262 673 278 Antisense
ATTTGAGGCCTAGCCAAACCACTTT 544 1 298 Antisense
TTCCCCGAGTTTTTCGTTCACATGA 150 687 321 Antisense
CGTTCACATGAACTAACTTGCCTTC 103 247 335 Antisense
CTAACTTGCCTTCACACATTTACAC 328 227 347 Antisense
Sequence Source Affymetrix Proprietary Database