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[173091_at]

Description CEK127B1R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D64881 /DEF=C.elegans cDNA clone yk127b1 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 52      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 15.5
(-3)
A 		21.9
(0.4)
A 		25.7
(2.4)
A 		26.9
(3)
A 		11
B 3.3
(-3)
A 		9.8
(-0.6)
A 		19.8
(3)
A 		6.1
(-2)
A 		17
C 42.5
(3)
A 		33.6
(1.5)
A 		13.3
(-1.8)
A 		5.7
(-3)
A 		37
avr 20.4
(2.1) 		21.8
(3) 		19.6
(1.5) 		12.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.4
(-1.9)
A 		7.5
(-2)
A 		13.7
(-1.1)
A 		1.3
(-3)
A 		39.7
(3)
A 		7.7
(-2)
A 		38
B 7.2
(-3)
A 		19.6
(-0.3)
A 		12.4
(-1.8)
A 		7
(-3)
A 		22.8
(0.4)
A 		34.5
(3)
A 		28
C 24.1
(3)
A 		4.6
(-2.6)
A 		3.3
(-3)
A 		18.1
(1.3)
A 		8.7
(-1.4)
A 		15.2
(0.4)
A 		21
avr 13.2
(-1.2) 		10.6
(-2.3) 		9.8
(-2.6) 		8.8
(-3) 		23.7
(3) 		19.1
(1.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.6
(0.6)
A 		4.8
(-1.1)
A 		6.7
(3)
A 		3.9
(-3)
A 		3
B 1
(-3)
A 		2.4
(-0.7)
A 		4.6
(3)
A 		1.3
(-2.5)
A 		4
C 14.1
(3)
A 		9.7
(1)
A 		4.6
(-1.4)
A 		1
(-3)
A 		13
avr 6.9
(3) 		5.6
(1.4) 		5.3
(1) 		2.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.6
(-2.3)
A 		2.7
(-1.8)
A 		3
(-1.6)
A 		0.3
(-3)
A 		12
(3)
A 		1.9
(-2.2)
A 		12
B 2.5
(-2.7)
A 		6.5
(-0.5)
A 		3
(-2.4)
A 		1.9
(-3)
A 		9.3
(1)
A 		12.9
(3)
A 		11
C 8.9
(3)
A 		1.4
(-2.6)
A 		0.8
(-3)
A 		3.6
(-0.9)
A 		2.8
(-1.5)
A 		5.1
(0.2)
A 		8
avr 4.3
(-0.6) 		3.5
(-1.4) 		2.3
(-2.6) 		1.9
(-3) 		8
(3) 		6.6
(1.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27469
Sequence Type Exemplar sequence
Representative Public ID CEK127B1R NCBI
Target Description CEK127B1R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D64881 /DEF=C.elegans cDNA clone yk127b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK127B1R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK127B1R CEK127B1R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D64881 /DEF=C.elegans cDNA clone yk127b1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15580725-15581053(-) 60.76 60.76
Sequence
Target Sequence 
>C. ELEGANS:173091_AT
tcatcatctgctgacgagtgactgctgagatcatgatgtgaatctccggcgtcttttgcg
gagaaaattgtgaataaactagagcaaaggaaaataaaaactagaagaacaatccacgtg
cgtgcgccaccctttgtcacactataatctacttttggtacaggtgtcagagcaaccgtg
agaaccggattgacaccanctgtcgaagcttaacatcggaacaccg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCATCTGCTGACGAGTGACTGC 587 611 13 Antisense
GACGAGTGACTGCTGAGATCATGAT 281 379 25 Antisense
GATCATGATGTGAATCTCCGGCGTC 52 421 41 Antisense
GAATCTCCGGCGTCTTTTGCGGAGA 157 329 52 Antisense
GAAGAACAATCCACGTGCGTGCGCC 3 339 116 Antisense
CCACCCTTTGTCACACTATAATCTA 633 273 139 Antisense
GTCACACTATAATCTACTTTTGGTA 270 465 148 Antisense
ATCTACTTTTGGTACAGGTGTCAGA 3 33 159 Antisense
GGTGTCAGAGCAACCGTGAGAACCG 396 499 175 Antisense
AACCGTGAGAACCGGATTGACACCA 458 145 186 Antisense
GTCGAAGCTTAACATCGGAACACCG 525 453 214 Antisense
Sequence Source Affymetrix Proprietary Database