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[173090_s_at] von Willebrand factor type A domain

Description CEK120E3R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66672 /DEF=C.elegans cDNA clone yk120e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 55      6grp_total > 73      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1395
1 2 3 4 range
A 1752.3
(3)
P 		1452.7
(1.7)
P 		1559.2
(2.2)
P 		357.7
(-3)
P 		1395
B 1425.9
(2.5)
P 		1324.5
(2)
P 		1522.6
(3)
P 		389.3
(-3)
P 		1133
C 1661.1
(3)
P 		1421.3
(1.9)
P 		1649.2
(2.9)
P 		364
(-3)
P 		1297
avr 1613.1
(3) 		1399.5
(2) 		1577
(2.8) 		370.3
(-3) 		1243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1286
1 2 3 4 5 6 range
A 1151.8
(-2.2)
P 		1237.9
(-1.8)
P 		2213.2
(2.7)
P 		2276.5
(3)
P 		1749.7
(0.5)
P 		991
(-3)
P 		1286
B 1361.6
(-3)
P 		1467.9
(-2.3)
P 		2175.3
(2.4)
P 		2055
(1.6)
P 		2274.1
(3)
P 		1498.5
(-2.1)
P 		913
C 1213.8
(-3)
P 		1213.2
(-3)
P 		1545.8
(-0.5)
P 		2007
(2.9)
P 		2026.2
(3)
P 		1498.6
(-0.9)
P 		813
avr 1242.4
(-3) 		1306.3
(-2.6) 		1978.1
(2.1) 		2112.8
(3) 		2016.7
(2.3) 		1329.4
(-2.4) 		870
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 586
1 2 3 4 range
A 638
(3)
P 		315.3
(-0.3)
P 		407.6
(0.6)
P 		52.4
(-3)
P 		586
B 454.7
(3)
P 		327.1
(0.9)
P 		352.8
(1.4)
P 		83
(-3)
P 		372
C 549.9
(2.7)
P 		408.6
(1.1)
P 		574.8
(3)
P 		61.4
(-3)
P 		513
avr 547.5
(3) 		350.3
(0.5) 		445.1
(1.7) 		65.6
(-3) 		482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 212.3
(-3)
P 		440.2
(0.7)
P 		482
(1.4)
P 		577.4
(3)
P 		528
(2.2)
P 		241.3
(-2.5)
P 		365
B 473.8
(-3)
P 		488.6
(-2.8)
P 		528.2
(-2.3)
P 		544.3
(-2.1)
P 		923.9
(3)
P 		558.8
(-1.9)
P 		450
C 449.9
(-1.3)
P 		370.2
(-3)
P 		393.4
(-2.5)
P 		403.6
(-2.3)
P 		655.6
(3)
P 		501.7
(-0.2)
P 		285
avr 378.7
(-3) 		433
(-2) 		467.9
(-1.3) 		508.4
(-0.6) 		702.5
(3) 		433.9
(-2) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173090_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27467
Sequence Type Exemplar sequence
Representative Public ID CEK120E3R NCBI
Target Description CEK120E3R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66672 /DEF=C.elegans cDNA clone yk120e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064344 NCBI Caenorhabditis elegans F35C5.8 (F35C5.8) mRNA, complete cds. 11/11 A 
SNAP00000007550 ENSEMBL cdna:SNAP chromosome:CEL140:II:12901229:12906442:1 11/11 None
GENEFINDER00000007557 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12895356:12903194:1 11/11 None
F35C5.8 ENSEMBL cdna:known chromosome:CEL140:II:12901191:12903213:1 gene:F35C5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12902388-12903190(+) 100.0 100.0
Public Domain and Genome References
Gene Title von Willebrand factor type A domain
Ensembl F35C5.8
Entrez Gene 174928 Entrez gene
SwissProt O45443 EMBL-EBI
WormBase CE15949 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03057 Hypothetical protein F35C5.8 [Caenorhabditis elegans] ref|NP_496745.1| F35C5.8 [Caenorhabditis elegans] 0.0
blast CAB03059 Hypothetical protein F35C5.9 [Caenorhabditis elegans] ref|NP_496746.1| F35C5.9 [Caenorhabditis elegans] 0.0
blast CAB03056 Hypothetical protein F35C5.7 [Caenorhabditis elegans] ref|NP_496744.1| F35C5.7 [Caenorhabditis elegans] 0.0
blast CAB03058 Hypothetical protein F35C5.6 [Caenorhabditis elegans] ref|NP_496743.1| F35C5.6 [Caenorhabditis elegans] 0.0
blast CAE60631 Hypothetical protein CBG04274 [Caenorhabditis briggsae] 0.0
blast CAE60630 Hypothetical protein CBG04273 [Caenorhabditis briggsae] 1.0E-161
blast CAB03059 Hypothetical protein F35C5.9 [Caenorhabditis elegans] ref|NP_496746.1| F35C5.9 [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.4E-24
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.5E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.8E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.1E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007557 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:173090_S_AT
gttggatcaacagaagcgggatttcaatttcaatttggtcaattccgactccactaaacc
ggtcaacgcattttacaatggtctattaaatctcaatggtaactggtattgggatcagcc
anacgatagatcaccgattccgctcgaccccaactctggagctccaccaactcgcaacgc
ttgtgttgctgatatgaagtattcagatggaactaccgcgtggactccggtgagctgtgc
gaataacttccgattcatctgtg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGATCAACAGAAGCGGGATTTC 574 433 22 Antisense
TTTGGTCAATTCCGACTCCACTAAA 338 655 55 Antisense
TCAATTCCGACTCCACTAAACCGGT 630 631 60 Antisense
TCCACTAAACCGGTCAACGCATTTT 193 587 71 Antisense
GGTCAACGCATTTTACAATGGTCTA 186 503 82 Antisense
AATGGTCTATTAAATCTCAATGGTA 520 163 98 Antisense
CAATGGTAACTGGTATTGGGATCAG 449 183 115 Antisense
CCACCAACTCGCAACGCTTGTGTTG 593 273 185 Antisense
AACTCGCAACGCTTGTGTTGCTGAT 581 139 190 Antisense
GGTGAGCTGTGCGAATAACTTCCGA 568 499 250 Antisense
GCGAATAACTTCCGATTCATCTGTG 277 289 260 Antisense
Sequence Source Affymetrix Proprietary Database