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[173089_at]

Description CEK101H4R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66516 /DEF=C.elegans cDNA clone yk101h4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 13      6grp_total > 23      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 81.8
(1.5)
P 		100.9
(3)
A 		76.6
(1.1)
A 		24.9
(-3)
A 		76
B 106.1
(1.5)
P 		137.2
(3)
P 		84.7
(0.5)
P 		12.8
(-3)
A 		124
C 89.9
(1.3)
P 		108.1
(3)
P 		67
(-0.9)
P 		45.2
(-3)
A 		63
avr 92.6
(1.4) 		115.4
(3) 		76.1
(0.3) 		27.6
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 167
(3)
P 		70
(-1.7)
M 		113.1
(0.4)
P 		62.1
(-2.1)
A 		74.1
(-1.5)
M 		43.5
(-3)
A 		124
B 170.4
(2.4)
P 		180.6
(3)
P 		150.6
(1.3)
P 		92.7
(-1.9)
P 		89.1
(-2.1)
P 		72.5
(-3)
P 		108
C 38.8
(-3)
A 		182.7
(3)
P 		93.4
(-0.7)
M 		116.3
(0.2)
A 		52.5
(-2.4)
A 		53
(-2.4)
P 		144
avr 125.4
(1.7) 		144.4
(3) 		119
(1.3) 		90.4
(-0.7) 		71.9
(-1.9) 		56.3
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 29.8
(3)
P 		21.9
(1.2)
A 		20
(0.8)
A 		3.6
(-3)
A 		26
B 33.8
(3)
P 		33.9
(3)
P 		19.6
(0.3)
P 		2.7
(-3)
A 		31
C 29.8
(2.7)
P 		31.1
(3)
P 		23.4
(1)
P 		7.6
(-3)
A 		24
avr 31.1
(3) 		29
(2.5) 		21
(0.7) 		4.6
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 30.8
(3)
P 		24.9
(1.2)
M 		24.6
(1.2)
P 		15.7
(-1.5)
A 		22.4
(0.5)
M 		10.6
(-3)
A 		20
B 59.3
(2.9)
P 		60.1
(3)
P 		36.6
(-1)
P 		24.6
(-3)
P 		36.2
(-1)
P 		27
(-2.6)
P 		36
C 14.4
(-3)
A 		55.8
(3)
P 		23.8
(-1.6)
M 		23.4
(-1.7)
A 		17
(-2.6)
A 		17.7
(-2.5)
P 		41
avr 34.8
(0.5) 		46.9
(3) 		28.3
(-0.9) 		21.2
(-2.4) 		25.2
(-1.6) 		18.4
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173089_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27456
Sequence Type Exemplar sequence
Representative Public ID CEK101H4R NCBI
Target Description CEK101H4R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66516 /DEF=C.elegans cDNA clone yk101h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK101H4R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK101H4R CEK101H4R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66516 /DEF=C.elegans cDNA clone yk101h4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11739447-11739805(-) 79.23 79.23
Sequence
Target Sequence 
>C. ELEGANS:173089_AT
gaggcattcttgttccatgagtatggattgttgcgaagggtggctcccccggtgttgaca
ttccatggtccccactcggtgagaagaactgacaatccggagcatcctggtccaccggta
anccagagaagaactggatcagttgatgggttgctttgagactcgccgaaccagtagtgg
agcatatgattcttcttggttcccacattgtagtagcccgaatattgcttgtagtttgag
attggagctccaggg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCATTCTTGTTCCATGAGTATG 578 399 16 Antisense
TGGATTGTTGCGAAGGGTGGCTCCC 550 549 39 Antisense
ATGGTCCCCACTCGGTGAGAAGAAC 383 51 80 Antisense
AGAACTGACAATCCGGAGCATCCTG 514 73 100 Antisense
TGATGGGTTGCTTTGAGACTCGCCG 389 567 159 Antisense
GAGACTCGCCGAACCAGTAGTGGAG 299 393 173 Antisense
GTAGTGGAGCATATGATTCTTCTTG 205 457 189 Antisense
TCTTCTTGGTTCCCACATTGTAGTA 403 615 206 Antisense
GTTCCCACATTGTAGTAGCCCGAAT 232 441 214 Antisense
GCCCGAATATTGCTTGTAGTTTGAG 412 285 231 Antisense
GTAGTTTGAGATTGGAGCTCCAGGG 90 453 246 Antisense
Sequence Source Affymetrix Proprietary Database