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[173088_s_at]

Description CEK095HZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66354 /DEF=C.elegans cDNA clone yk95h12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 94      6grp_total > 78      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9591
1 2 3 4 range
A 531
(-2.7)
P 		225
(-3)
P 		166.3
(-3)
P 		7229.4
(3)
P 		7063
B 453.7
(-2.8)
P 		277.9
(-2.9)
P 		201.7
(-3)
P 		9174
(3)
P 		8972
C 712
(-2.7)
P 		274.8
(-3)
P 		253
(-3)
P 		9757.4
(3)
P 		9504
avr 565.6
(-2.7) 		259.2
(-3) 		207
(-3) 		8720.3
(3) 		8513

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 625
1 2 3 4 5 6 range
A 442.6
(-0.9)
P 		339.1
(-2.5)
P 		307.9
(-3)
P 		325.1
(-2.7)
P 		454.7
(-0.7)
P 		685.9
(3)
P 		378
B 453.2
(-2)
P 		366.2
(-3)
P 		425
(-2.3)
P 		427.5
(-2.3)
P 		608.5
(-0.3)
P 		897.5
(3)
P 		531
C 342.6
(-2.6)
P 		368.3
(-2.3)
P 		296.7
(-3)
P 		405.1
(-2)
P 		501.7
(-1)
P 		921.8
(3)
P 		625
avr 412.8
(-2.2) 		357.9
(-2.8) 		343.2
(-3) 		385.9
(-2.5) 		521.6
(-0.8) 		835.1
(3) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1912
1 2 3 4 range
A 193.3
(-2.1)
P 		48.8
(-3)
P 		43.5
(-3)
P 		1058.2
(3)
P 		1015
B 144.7
(-2.7)
P 		68.6
(-2.9)
P 		46.7
(-3)
P 		1955
(3)
P 		1908
C 235.7
(-2.4)
P 		79
(-3)
P 		88.2
(-3)
P 		1645.3
(3)
P 		1566
avr 191.2
(-2.5) 		65.5
(-3) 		59.5
(-3) 		1552.8
(3) 		1493

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 81.6
(-2.1)
P 		120.6
(0.2)
P 		67.1
(-3)
P 		82.5
(-2.1)
P 		137.2
(1.2)
P 		167
(3)
P 		100
B 157.7
(-1.6)
P 		121.9
(-2.5)
P 		103.2
(-3)
P 		113.2
(-2.7)
P 		247.2
(0.7)
P 		334.7
(3)
P 		232
C 127
(-1.7)
P 		112.4
(-2.1)
P 		75.5
(-3)
P 		81.5
(-2.8)
P 		162.4
(-0.8)
P 		308.6
(3)
P 		233
avr 122.1
(-1.7) 		118.3
(-1.8) 		81.9
(-3) 		92.4
(-2.7) 		182.3
(0.2) 		270.1
(3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173088_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27449
Sequence Type Exemplar sequence
Representative Public ID CEK095HZR NCBI
Target Description CEK095HZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66354 /DEF=C.elegans cDNA clone yk95h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026725(11), NM_001026724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026725 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-5) (twk-5) mRNA, complete cds. 11/11 None
NM_001026724 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-5) (twk-5) mRNA, complete cds. 11/11 None
SNAP00000019010 ENSEMBL cdna:SNAP chromosome:CEL140:II:11483193:11485121:-1 11/11 None
GENEFINDER00000019031 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11483193:11485121:-1 11/11 None
B0334.2b ENSEMBL cdna:known chromosome:CEL140:II:11483126:11485215:-1 gene:B0334.2 11/11 None
B0334.2a ENSEMBL cdna:known chromosome:CEL140:II:11483193:11484752:-1 gene:B0334.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11483122-11483890(-) 99.42 99.42
Public Domain and Genome References
Ensembl B0334.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91376 Hypothetical protein B0334.2a [Caenorhabditis elegans] ref|NP_001021895.1| TWiK family of potassium channels family member (twk-5) [Caenorhabditis elegans] 1.0E-158
blast CAI46547 Hypothetical protein B0334.2b [Caenorhabditis elegans] ref|NP_001021896.1| TWiK family of potassium channels family member (twk-5) [Caenorhabditis elegans] 1.0E-152
blast CAA91376 Hypothetical protein B0334.2a [Caenorhabditis elegans] ref|NP_001021895.1| TWiK family of potassium channels family member (twk-5) [Caenorhabditis elegans] 1.0E-148
blast CAI46547 Hypothetical protein B0334.2b [Caenorhabditis elegans] ref|NP_001021896.1| TWiK family of potassium channels family member (twk-5) [Caenorhabditis elegans] 1.0E-148
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021896.1 5 13-35,50-67,74-96,127-149,185-207
NP_001021895.1 5 20-42,54-71,81-103,136-158,192-214
B0334.2b 5 13-35,50-67,74-96,127-149,185-207
B0334.2a 5 20-42,54-71,81-103,136-158,192-214
SNAP00000019010 5 13-35,50-67,74-96,127-149,185-207
GENEFINDER00000019031 5 13-35,50-67,74-96,127-149,185-207
Sequence
Target Sequence 
>C. ELEGANS:173088_S_AT
tattatgctgattagttatgtgactaattggtttactcagctcttcgcccgtcaaccatt
ccgtgganccgacgttgaagtaatgatcggaggacaatgtattactgtatcagagatcac
ttctcttgttgccaaggaattccacgcatcacctcatcaagtccgttcgattcttcacga
catcaatggtattatggaggatatgaagaccgaagaggattcagagaaatctgatatttt
ggttgctcaggatctttaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATGCTGATTAGTTATGTGACT 580 663 31 Antisense
TAATTGGTTTACTCAGCTCTTCGCC 679 631 55 Antisense
GATCGGAGGACAATGTATTACTGTA 648 415 115 Antisense
ATTACTGTATCAGAGATCACTTCTC 367 13 131 Antisense
AGAGATCACTTCTCTTGTTGCCAAG 648 67 142 Antisense
GTTGCCAAGGAATTCCACGCATCAC 324 441 158 Antisense
TCATCAAGTCCGTTCGATTCTTCAC 132 621 184 Antisense
TCCGTTCGATTCTTCACGACATCAA 409 595 192 Antisense
GATTCTTCACGACATCAATGGTATT 627 429 199 Antisense
GAGAAATCTGATATTTTGGTTGCTC 126 393 254 Antisense
TATTTTGGTTGCTCAGGATCTTTAA 41 661 265 Antisense
Sequence Source Affymetrix Proprietary Database