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[173086_s_at]

Description CEK049HZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D64348 /DEF=C.elegans cDNA clone yk49h12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 47      6grp_total > 28      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4085
1 2 3 4 range
A 3672.9
(1.2)
P 		1959.4
(-1.9)
P 		1342.2
(-3)
P 		4710.9
(3)
P 		3369
B 3598.3
(1.1)
P 		2092.8
(-1.6)
P 		1324.9
(-3)
P 		4669.3
(3)
P 		3344
C 3574.7
(0.4)
P 		2143.6
(-1.7)
P 		1290.7
(-3)
P 		5375.5
(3)
P 		4085
avr 3615.3
(0.8) 		2065.3
(-1.8) 		1319.3
(-3) 		4918.6
(3) 		3599

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3458
1 2 3 4 5 6 range
A 5334.2
(3)
P 		3135.7
(-1.4)
P 		2431
(-2.9)
P 		2369.3
(-3)
P 		4205.3
(0.7)
P 		3042.4
(-1.6)
P 		2965
B 4800.3
(3)
P 		3147.9
(-0.4)
P 		1876.1
(-3)
P 		3392.7
(0.1)
P 		3612.8
(0.6)
P 		3650.5
(0.6)
P 		2924
C 4135.2
(3)
P 		3423.4
(0.3)
P 		2642.2
(-2.7)
P 		2560.2
(-3)
P 		2892.2
(-1.7)
P 		3806.3
(1.7)
P 		1575
avr 4756.6
(3) 		3235.7
(-0.7) 		2316.4
(-3) 		2774.1
(-1.9) 		3570.1
(0.1) 		3499.7
(-0.1) 		2440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1030
1 2 3 4 range
A 1337.3
(3)
P 		425.3
(-2.5)
P 		350.9
(-3)
P 		689.6
(-0.9)
P 		986
B 1147.5
(3)
P 		516.9
(-1.5)
P 		307
(-3)
P 		995
(1.9)
P 		841
C 1183.3
(3)
P 		616.3
(-1.6)
P 		449.8
(-3)
P 		906.4
(0.7)
P 		734
avr 1222.7
(3) 		519.5
(-1.9) 		369.2
(-3) 		863.7
(0.5) 		854

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1215
1 2 3 4 5 6 range
A 983.3
(0.7)
P 		1115.2
(1.8)
P 		529.4
(-3)
P 		600.9
(-2.4)
P 		1269
(3)
P 		740.7
(-1.3)
P 		740
B 1670.3
(3)
P 		1047.8
(-0.1)
P 		455.6
(-3)
P 		898.6
(-0.8)
P 		1467.8
(2)
P 		1361.2
(1.5)
P 		1215
C 1532.8
(3)
P 		1044.6
(0.1)
P 		672.5
(-2.1)
P 		514.9
(-3)
P 		935.9
(-0.5)
P 		1274.2
(1.5)
P 		1018
avr 1395.5
(3) 		1069.2
(0.7) 		552.5
(-3) 		671.5
(-2.2) 		1224.2
(1.8) 		1125.4
(1.1) 		843
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173086_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27402
Sequence Type Exemplar sequence
Representative Public ID CEK049HZR NCBI
Target Description CEK049HZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D64348 /DEF=C.elegans cDNA clone yk49h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028685 NCBI Caenorhabditis elegans F26F12.3c (F26F12.3) mRNA, complete cds. 11/11 None
F26F12.3c.1 ENSEMBL cdna:known chromosome:CEL140:V:5841563:5845324:-1 gene:F26F12.3 11/11 None
F26F12.3c.2 ENSEMBL cdna:known chromosome:CEL140:V:5841564:5848313:-1 gene:F26F12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178972 3 1 NM_001028685 173086_s_at (11), 174514_at (11), 175083_s_at (11)
NM_072126 175083_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5841571-5841725(-) 85.56 85.56
Public Domain and Genome References
Ensembl F26F12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023856 F26F12.3c [Caenorhabditis elegans] gb|AAV58870.1| Hypothetical protein F26F12.3c [Caenorhabditis elegans] 0.0
blast NP_504528 F26F12.3b [Caenorhabditis elegans] gb|AAD34666.1| Hypothetical protein F26F12.3b [Caenorhabditis elegans] 0.0
blast NP_504527 F26F12.3a [Caenorhabditis elegans] gb|AAC25890.2| Hypothetical protein F26F12.3a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173086_S_AT
acctcgttttctatgtactcaacttgcccttatcctatctaatatgcctagatcgtgttt
tttttgtattcaattttgctttagtgtatatgttttctgccagatcaatatgtattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTCGTTTTCTATGTACTCAACTT 465 85 46 Antisense
GTTTTCTATGTACTCAACTTGCCCT 249 449 51 Antisense
TTCTATGTACTCAACTTGCCCTTAT 290 691 54 Antisense
CTTGCCCTTATCCTATCTAATATGC 347 219 68 Antisense
GCCCTTATCCTATCTAATATGCCTA 190 287 71 Antisense
TAATATGCCTAGATCGTGTTTTTTT 341 635 85 Antisense
TATGCCTAGATCGTGTTTTTTTTGT 307 657 88 Antisense
GTATTCAATTTTGCTTTAGTGTATA 400 451 111 Antisense
GCTTTAGTGTATATGTTTTCTGCCA 176 305 123 Antisense
AGTGTATATGTTTTCTGCCAGATCA 483 59 128 Antisense
TTTTCTGCCAGATCAATATGTATTT 301 675 138 Antisense
Sequence Source Affymetrix Proprietary Database