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[173085_at]

Description CEK101DZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66489 /DEF=C.elegans cDNA clone yk101d12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 24      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_total > 02      4grp_total > 38      6grp_cgc > 43      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 436.8
(3)
P 		260.2
(-0.3)
P 		119.6
(-3)
P 		244.8
(-0.6)
P 		317
B 430.9
(3)
P 		238
(-1.7)
P 		186.5
(-3)
P 		293
(-0.4)
P 		244
C 554.5
(3)
P 		296.9
(-2.3)
P 		261.3
(-3)
P 		330.6
(-1.6)
P 		293
avr 474.1
(3) 		265
(-1.4) 		189.1
(-3) 		289.5
(-0.9) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 571
1 2 3 4 5 6 range
A 381.7
(1.2)
P 		490.1
(3)
P 		174.4
(-2.3)
P 		147.6
(-2.7)
P 		138.6
(-2.9)
P 		131.4
(-3)
A 		359
B 375.2
(2.9)
P 		329.3
(1.8)
P 		291.9
(0.9)
P 		379.8
(3)
P 		252.5
(-0.1)
P 		129.4
(-3)
P 		250
C 387.9
(0)
P 		670.3
(3)
P 		347.4
(-0.4)
P 		197.7
(-2)
P 		232.5
(-1.6)
P 		99
(-3)
P 		571
avr 381.6
(1.2) 		496.6
(3) 		271.2
(-0.6) 		241.7
(-1.1) 		207.9
(-1.6) 		119.9
(-3) 		377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 159
(3)
P 		56.5
(-1.8)
P 		31.3
(-3)
P 		35.8
(-2.8)
P 		128
B 137.4
(3)
P 		58.8
(-2)
P 		43.2
(-3)
P 		62.4
(-1.8)
P 		94
C 183.5
(3)
P 		85.4
(-1.6)
P 		91.1
(-1.3)
P 		55.7
(-3)
P 		128
avr 160
(3) 		66.9
(-2.1) 		55.2
(-2.8) 		51.3
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 70.4
(-1.4)
P 		174.3
(3)
P 		38
(-2.7)
P 		37.4
(-2.8)
P 		41.8
(-2.6)
P 		32
(-3)
A 		142
B 130.6
(3)
P 		109.6
(1.5)
P 		70.9
(-1.3)
P 		100.6
(0.8)
P 		102.6
(1)
P 		48.2
(-3)
P 		82
C 143.8
(0.9)
P 		204.5
(3)
P 		88.4
(-1.1)
P 		39.8
(-2.8)
P 		75.2
(-1.5)
P 		33.2
(-3)
P 		171
avr 114.9
(0.7) 		162.8
(3) 		65.8
(-1.7) 		59.3
(-2) 		73.2
(-1.3) 		37.8
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27455
Sequence Type Exemplar sequence
Representative Public ID CEK101DZR NCBI
Target Description CEK101DZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D66489 /DEF=C.elegans cDNA clone yk101d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028495, NM_001028492, NM_001028493, NM_001028494, Z29644
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028494 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. None
SNAP00000035606 ENSEMBL cdna:SNAP chromosome:CEL140:V:5579698:5582099:-1 None
GENEFINDER00000035607 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5579698:5583998:-1 None
NM_001028493 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. None
NM_001028492 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. None
C18C4.10d ENSEMBL cdna:known chromosome:CEL140:V:5578005:5582099:-1 gene:C18C4.10 None
NM_001028495 NCBI Caenorhabditis elegans Kinesin Light Chain family member (klc-2) (klc-2) mRNA, complete cds. None
C18C4.10b.4 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5582125:-1 gene:C18C4.10 None
C18C4.10b.3 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5582129:-1 gene:C18C4.10 A 
Z29644 NCBI C.elegans mRNA for kinesin light chain (isoform 1). A 
C18C4.10b.1 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5582124:-1 gene:C18C4.10 A 
C18C4.10b.2 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5583998:-1 gene:C18C4.10 A 
C18C4.10b.5 ENSEMBL cdna:known chromosome:CEL140:V:5578964:5584308:-1 gene:C18C4.10 None
C18C4.10c ENSEMBL cdna:known chromosome:CEL140:V:5579076:5583963:-1 gene:C18C4.10 None
C18C4.10a ENSEMBL cdna:known chromosome:CEL140:V:5579248:5583936:-1 gene:C18C4.10 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5579088-5580593(-) 84.18 90.75
Public Domain and Genome References
Ensembl C18C4.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68902 Kinesin light chain protein 2, isoform d [Caenorhabditis elegans] ref|NP_001023666.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] 0.0
blast AAN84862 Kinesin light chain protein 2, isoform b [Caenorhabditis elegans] ref|NP_001023664.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] sp|P46822|KLC_CAEEL Kinesin light chain (KLC) 0.0
blast AAN84863 Kinesin light chain protein 2, isoform c [Caenorhabditis elegans] ref|NP_001023665.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] 0.0
blast CAA82752 kinesin light chain (isoform 1) [Caenorhabditis elegans] 0.0
blast H89052 protein C18C4.10 [imported] - Caenorhabditis elegans 0.0
blast AAK52182 Kinesin light chain protein 2, isoform a [Caenorhabditis elegans] ref|NP_001023663.1| Kinesin Light Chain family member (klc-2) [Caenorhabditis elegans] 0.0
blast CAA82753 kinesin light chain (isoform 2) [Caenorhabditis elegans] pir||S41865 kinesin light chain (isoform 2) - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 8.4E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-7
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0096
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 8.4E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-7
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0096
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-5
Pfam IPR001440 EMBL-EBI TPR repeat 8.4E-7
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-7
Pfam IPR001440 EMBL-EBI TPR repeat 2.1E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.0096
Sequence
Target Sequence 
>C. ELEGANS:173085_AT
gaaacagatgtccgaatctcgaagaatggngcgatccgttatgtattgattgttgctcga
cattgtactccgtcatcaagctttacacttcttcccccaattccccaagtttacaagttc
tcatttatttatatgtatcaagttctaattaaacactgcttttctatttttgtt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACAGATGTCCGAATCTCGAAGA 34 357 141 Antisense
GCGATCCGTTATGTATTGATTGTTG 174 291 171 Antisense
GATTGTTGCTCGACATTGTACTCCG 75 435 188 Antisense
TCGACATTGTACTCCGTCATCAAGC 33 603 197 Antisense
ATTGTACTCCGTCATCAAGCTTTAC 223 3 202 Antisense
ACTCCGTCATCAAGCTTTACACTTC 460 99 207 Antisense
CGTCATCAAGCTTTACACTTCTTCC 251 247 211 Antisense
ATTCCCCAAGTTTACAAGTTCTCAT 521 7 240 Antisense
GTTTACAAGTTCTCATTTATTTATA 20 449 249 Antisense
AGTTCTAATTAAACACTGCTTTTCT 541 63 281 Antisense
TAAACACTGCTTTTCTATTTTTGTT 221 641 290 Antisense
Sequence Source Affymetrix Proprietary Database