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[173082_at]

Description AV178755 /REP_DB=TREMBL Accession /FEA=EST Transcript /GB=AV178755 /DEF=Caenorhabditis elegans cDNA clone:yk571d9 : 3prime end, single read.
Cluster 6grp_total > 75      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3.3
(-3)
A 		9.9
(-1.5)
A 		29.6
(3)
A 		5.3
(-2.5)
A 		26
B 6.8
(-2.4)
A 		29
(2)
A 		3.8
(-3)
A 		34.1
(3)
A 		30
C 26
(2.5)
A 		28.1
(3)
A 		24.2
(2.1)
A 		3.3
(-3)
A 		25
avr 12
(-3) 		22.3
(3) 		19.2
(1.2) 		14.2
(-1.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 19.6
(-1)
A 		4.3
(-3)
A 		19.5
(-1)
A 		40.6
(1.7)
A 		15.4
(-1.6)
A 		50.4
(3)
A 		46
B 15.9
(-0.9)
A 		15.7
(-0.9)
A 		5.5
(-3)
A 		30.2
(2)
A 		8
(-2.5)
A 		35
(3)
A 		30
C 1.5
(-2.9)
A 		22.9
(1)
A 		18.3
(0.2)
A 		33.7
(3)
A 		1.1
(-3)
A 		12.8
(-0.8)
A 		33
avr 12.3
(-2.1) 		14.3
(-1.6) 		14.4
(-1.6) 		34.8
(3) 		8.2
(-3) 		32.7
(2.5) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-2.7)
A 		2.2
(-1.8)
A 		7.7
(3)
A 		0.8
(-3)
A 		7
B 2.2
(-1.8)
A 		7.2
(2.9)
A 		0.9
(-3)
A 		7.3
(3)
A 		6
C 8.6
(3)
A 		8.1
(2.6)
A 		8.5
(2.9)
A 		0.6
(-3)
A 		8
avr 4
(-0.7) 		5.8
(3) 		5.7
(2.8) 		2.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.6
(-1.8)
A 		1.5
(-3)
A 		4.2
(-1.5)
A 		10.3
(1.9)
A 		4.6
(-1.3)
A 		12.3
(3)
A 		11
B 5.5
(-0.9)
A 		5.2
(-1)
A 		1.3
(-3)
A 		8
(0.4)
A 		3.3
(-2)
A 		13.1
(3)
A 		12
C 0.6
(-2.7)
A 		7
(3)
A 		4.7
(0.9)
A 		6.8
(2.8)
A 		0.3
(-3)
A 		4.3
(0.6)
A 		7
avr 3.2
(-2.6) 		4.6
(-1.4) 		3.4
(-2.4) 		8.4
(1.8) 		2.7
(-3) 		9.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173082_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28265
Sequence Type Exemplar sequence
Representative Public ID AV178755 NCBI
Target Description AV178755 /REP_DB=TREMBL Accession /FEA=EST Transcript /GB=AV178755 /DEF=Caenorhabditis elegans cDNA clone:yk571d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV178755
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV178755 AV178755 /REP_DB=TREMBL Accession /FEA=EST Transcript /GB=AV178755 /DEF=Caenorhabditis elegans cDNA clone:yk571d9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061071 9/11 Negative Strand Matching Probes A 
C37A5.1.1 9/11 Negative Strand Matching Probes None
C37A5.1.2 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14166630-14167044(+) 88.0 88.0
Sequence
Target Sequence 
>C. ELEGANS:173082_AT
gggcttgtaggttcttcactgaagcgtcctaggaagcacaaatactggttgctgagctgg
cagtggatcagttgtctccgactcctcttcaagcttcggcaaatgactctgagaagttat
gcccgacagtccagacaaattgaacccattcgatagctcaaaagctccatanggccgctg
tggagccatggattggga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTTGTAGGTTCTTCACTGAAGC 8 493 13 Antisense
TTCACTGAAGCGTCCTAGGAAGCAC 502 683 27 Antisense
CTGGTTGCTGAGCTGGCAGTGGATC 526 237 57 Antisense
GCAGTGGATCAGTTGTCTCCGACTC 610 311 72 Antisense
CTCCTCTTCAAGCTTCGGCAAATGA 158 235 94 Antisense
CAAGCTTCGGCAAATGACTCTGAGA 78 187 102 Antisense
TGACTCTGAGAAGTTATGCCCGACA 152 571 116 Antisense
AGTTATGCCCGACAGTCCAGACAAA 279 63 127 Antisense
GTCCAGACAAATTGAACCCATTCGA 269 477 141 Antisense
GAACCCATTCGATAGCTCAAAAGCT 296 345 154 Antisense
GCCGCTGTGGAGCCATGGATTGGGA 24 287 186 Antisense
Sequence Source Affymetrix Proprietary Database