[Home] | [Total List]

[173079_s_at]

Description AV184196_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184196 /DEF=Caenorhabditis elegans cDNA clone:yk661c9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 58      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_total > 48      4grp_total > 31      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 264.2
(3)
P 		168
(-2)
P 		149.4
(-3)
P 		174.1
(-1.7)
P 		115
B 195.2
(3)
P 		111.9
(-3)
P 		119.1
(-2.5)
P 		130
(-1.7)
P 		83
C 223.7
(2.5)
P 		161.8
(-1)
P 		127.5
(-3)
P 		232.7
(3)
P 		105
avr 227.7
(3) 		147.2
(-2) 		132
(-3) 		178.9
(-0.1) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 133.9
(-0)
P 		124.7
(-0.4)
P 		84.6
(-1.9)
P 		87.6
(-1.8)
P 		56.2
(-3)
P 		213
(3)
P 		157
B 160.8
(1.9)
P 		135.3
(-0)
P 		104.1
(-2.3)
P 		95
(-3)
P 		114.2
(-1.6)
P 		176.1
(3)
P 		81
C 205
(3)
P 		135.1
(-0.2)
P 		73.9
(-3)
M 		126.2
(-0.6)
P 		164.9
(1.2)
P 		197.6
(2.7)
P 		131
avr 166.6
(1.4) 		131.7
(-0.5) 		87.5
(-3) 		102.9
(-2.1) 		111.8
(-1.7) 		195.6
(3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 96.2
(3)
P 		36.5
(-2.1)
P 		39
(-1.9)
P 		25.5
(-3)
P 		71
B 62.2
(3)
P 		27.6
(-3)
P 		27.6
(-3)
P 		27.7
(-3)
P 		35
C 74
(3)
P 		46.5
(-1.7)
P 		44.5
(-2.1)
P 		39.2
(-3)
P 		35
avr 77.5
(3) 		36.9
(-2.2) 		37
(-2.2) 		30.8
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 24.7
(-1.7)
P 		44.3
(1.7)
P 		18.4
(-2.8)
P 		22.2
(-2.1)
P 		17
(-3)
P 		51.9
(3)
P 		35
B 56
(1.6)
P 		45
(-0.1)
P 		25.3
(-3)
P 		25.2
(-3)
P 		46.4
(0.1)
P 		65.7
(3)
P 		41
C 76
(3)
P 		41.2
(-0.7)
P 		18.8
(-3)
M 		25.4
(-2.3)
P 		53.3
(0.6)
P 		66.1
(2)
P 		57
avr 52.2
(1.7) 		43.5
(0.4) 		20.8
(-3) 		24.3
(-2.5) 		38.9
(-0.3) 		61.2
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173079_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26869
Sequence Type Exemplar sequence
Representative Public ID AV184196 NCBI
Target Description AV184196_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184196 /DEF=Caenorhabditis elegans cDNA clone:yk661c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058272 NCBI Caenorhabditis elegans Y48G1C.7 (Y48G1C.7) mRNA, complete cds. 11/11 None
Y48G1C.7 ENSEMBL cdna:known chromosome:CEL140:I:96212:100613:-1 gene:Y48G1C.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:96568-96837(-) 89.67 89.67
Public Domain and Genome References
Gene Title
Ensembl Y48G1C.7
Entrez Gene 171600 Entrez gene
SwissProt Q9BL75 EMBL-EBI
WormBase CE27266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490673 Y48G1C.7 [Caenorhabditis elegans] gb|AAK29896.1| Hypothetical protein Y48G1C.7 [Caenorhabditis elegans] 0.0
blast CAE60312 Hypothetical protein CBG03903 [Caenorhabditis briggsae] 0.0
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:173079_S_AT
atatccaatgatctcgtttttttccatttttaatgtgctctgtgagctttttttttcttt
ttctctaacctttacccctttttacgtgccttttctcgttgttcacccactttttgtctg
cctgcctacattcctacatgtctatttgtaggcaggcattcatttttcaagccctagtgg
cgtgacctttgatctcctcttaccttttatagttttttttntattttgttacacacattt
gaagttgaccccc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCCAATGATCTCGTTTTTTTCC 516 19 14 Antisense
TCCATTTTTAATGTGCTCTGTGAGC 117 591 36 Antisense
TAATGTGCTCTGTGAGCTTTTTTTT 340 637 44 Antisense
CTGCCTACATTCCTACATGTCTATT 305 237 135 Antisense
ACATGTCTATTTGTAGGCAGGCATT 350 105 149 Antisense
GGCAGGCATTCATTTTTCAAGCCCT 140 537 164 Antisense
CATTCATTTTTCAAGCCCTAGTGGC 414 215 170 Antisense
TTTCAAGCCCTAGTGGCGTGACCTT 635 671 178 Antisense
CAAGCCCTAGTGGCGTGACCTTTGA 529 185 181 Antisense
TGATCTCCTCTTACCTTTTATAGTT 31 565 203 Antisense
TTACACACATTTGAAGTTGACCCCC 108 611 242 Antisense
Sequence Source Affymetrix Proprietary Database