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[173078_at]

Description AV184175_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184175 /DEF=Caenorhabditis elegans cDNA clone:yk661a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 96      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 90      6grp_total > 86      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 150
(-1.4)
P 		207.7
(0.2)
P 		95
(-3)
P 		304.2
(3)
P 		209
B 115.7
(-2)
P 		142
(-0.9)
P 		92.2
(-3)
P 		236.3
(3)
P 		144
C 143.3
(-1.6)
P 		101.7
(-2.8)
P 		94.1
(-3)
P 		303.8
(3)
P 		210
avr 136.3
(-1.6) 		150.5
(-1.2) 		93.8
(-3) 		281.4
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 101.6
(-1.8)
P 		68.5
(-3)
P 		113.7
(-1.4)
P 		161.4
(0.3)
P 		205.4
(1.9)
P 		235.9
(3)
P 		167
B 101
(-2.8)
P 		93.6
(-3)
P 		139.8
(-1.6)
P 		181.5
(-0.4)
P 		184.6
(-0.3)
P 		295.9
(3)
P 		202
C 116.9
(-1.4)
P 		48.8
(-3)
P 		107.7
(-1.6)
P 		110.3
(-1.5)
P 		192.1
(0.5)
P 		296.9
(3)
P 		248
avr 106.5
(-1.9) 		70.3
(-3) 		120.4
(-1.5) 		151.1
(-0.6) 		194
(0.6) 		276.2
(3) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 54.6
(3)
P 		45.1
(1.1)
P 		24.8
(-3)
P 		44.5
(1)
P 		30
B 36.9
(0.2)
P 		35.1
(-0.2)
P 		21.4
(-3)
P 		50.4
(3)
P 		29
C 47.4
(2)
P 		29.2
(-3)
P 		32.8
(-2)
P 		51.2
(3)
P 		22
avr 46.3
(2.4) 		36.5
(-0.3) 		26.3
(-3) 		48.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 18.7
(-3)
P 		24.4
(-2.2)
P 		24.8
(-2.2)
P 		40.9
(0.1)
P 		62
(3)
P 		57.4
(2.4)
P 		43
B 35.1
(-2.7)
P 		31.2
(-3)
P 		34
(-2.8)
P 		48.1
(-1.7)
P 		75
(0.3)
P 		110.4
(3)
P 		79
C 43.3
(-1)
P 		14.9
(-3)
P 		27.4
(-2.1)
P 		22.2
(-2.5)
P 		62.1
(0.4)
P 		99.4
(3)
P 		85
avr 32.4
(-2.2) 		23.5
(-3) 		28.7
(-2.5) 		37.1
(-1.8) 		66.4
(0.9) 		89.1
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26868
Sequence Type Exemplar sequence
Representative Public ID AV184175 NCBI
Target Description AV184175_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184175 /DEF=Caenorhabditis elegans cDNA clone:yk661a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058426 NCBI Caenorhabditis elegans Y48G8AL.7 (Y48G8AL.7) mRNA, complete cds. 11/11 None
GENEFINDER00000040540 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1157573:1162876:1 11/11 None
Y48G8AL.7 ENSEMBL cdna:known chromosome:CEL140:I:1157571:1162877:1 gene:Y48G8AL.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040527 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1157993-1162877(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G8AL.7
Entrez Gene 171693 Entrez gene
SwissProt Q9BL18 EMBL-EBI
WormBase CE27275 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29909 Hypothetical protein Y48G8AL.7 [Caenorhabditis elegans] ref|NP_490827.1| Y48G8AL.7 [Caenorhabditis elegans] 1.0E-102
blast CAE63932 Hypothetical protein CBG08509 [Caenorhabditis briggsae] 1.0E-99
blast CAE63932 Hypothetical protein CBG08509 [Caenorhabditis briggsae] 4.0E-80
Sequence
Target Sequence 
>C. ELEGANS:173078_AT
aagttttctcgtctgggaattacagtgtcagcgatgaagcgctggattccctatgcgaag
cgatcaaatcggcgccagaaaccacggaaaagatgaaaaagttccgaaatcttcagcgga
tcatcacaaaatacggccggcgcacaaaaaagaccatcgaagagctcctttttagcccga
ttcacttggagcagcaaccagatgaagctccgaggattgtggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTTCTCGTCTGGGAATTACAG 142 155 13 Antisense
GGAATTACAGTGTCAGCGATGAAGC 110 533 28 Antisense
TGAAGCGCTGGATTCCCTATGCGAA 89 575 47 Antisense
GCGAAGCGATCAAATCGGCGCCAGA 703 287 67 Antisense
ATCGGCGCCAGAAACCACGGAAAAG 393 33 80 Antisense
CCGAAATCTTCAGCGGATCATCACA 673 263 116 Antisense
TCATCACAAAATACGGCCGGCGCAC 301 621 133 Antisense
GGCCGGCGCACAAAAAAGACCATCG 621 541 147 Antisense
ATCGAAGAGCTCCTTTTTAGCCCGA 41 37 168 Antisense
TTAGCCCGATTCACTTGGAGCAGCA 564 681 184 Antisense
GATGAAGCTCCGAGGATTGTGGATG 206 413 213 Antisense
Sequence Source Affymetrix Proprietary Database