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[173077_s_at] BRCA1 C Terminus (BRCT) domain (4 domains)

Description AV180443_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180443 /DEF=Caenorhabditis elegans cDNA clone:yk607d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 92      6grp_total > 76      4grp_total > 63      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 202.7
(3)
P 		192.8
(2.3)
P 		187.6
(1.9)
P 		117.2
(-3)
P 		86
B 254
(3)
P 		150.7
(-3)
P 		202.2
(-0)
P 		185.8
(-1)
P 		103
C 168.1
(-2.1)
P 		158.6
(-3)
P 		193
(0.1)
P 		224.2
(3)
P 		66
avr 208.3
(3) 		167.4
(-3) 		194.3
(0.9) 		175.7
(-1.8) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 212.3
(-2)
P 		175.5
(-3)
P 		300.3
(0.3)
P 		252.7
(-0.9)
P 		320.1
(0.9)
P 		399.5
(3)
P 		224
B 155.9
(-3)
P 		256.3
(-0.8)
P 		236.3
(-1.2)
P 		252.6
(-0.9)
P 		213.4
(-1.7)
P 		427.9
(3)
P 		272
C 187.7
(-3)
P 		218.1
(-2.3)
P 		198.7
(-2.7)
P 		296.5
(-0.5)
P 		235.2
(-1.9)
P 		444.4
(3)
P 		257
avr 185.3
(-3) 		216.6
(-2.2) 		245.1
(-1.5) 		267.3
(-0.9) 		256.2
(-1.2) 		423.9
(3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 73.8
(3)
P 		41.8
(-0.4)
P 		49
(0.4)
P 		17.2
(-3)
P 		57
B 81
(3)
P 		37.2
(-3)
P 		46.9
(-1.7)
P 		39.6
(-2.7)
P 		44
C 55.6
(0.6)
P 		45.6
(-1.4)
P 		67.3
(3)
P 		37.8
(-3)
P 		30
avr 70.1
(3) 		41.5
(-1.4) 		54.4
(0.6) 		31.5
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 39.1
(-3)
P 		62.4
(-0.6)
P 		65.4
(-0.3)
P 		64.1
(-0.4)
P 		96.6
(2.9)
P 		97.3
(3)
P 		58
B 54.2
(-3)
P 		85.3
(-1.2)
P 		57.4
(-2.8)
P 		66.9
(-2.3)
P 		86.7
(-1.1)
P 		159.5
(3)
P 		105
C 69.6
(-1.8)
P 		66.5
(-2)
P 		50.6
(-3)
P 		59.6
(-2.5)
P 		76.1
(-1.4)
P 		148.8
(3)
P 		98
avr 54.3
(-3) 		71.4
(-1.7) 		57.8
(-2.7) 		63.5
(-2.3) 		86.5
(-0.6) 		135.2
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173077_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26695
Sequence Type Exemplar sequence
Representative Public ID AV180443 NCBI
Target Description AV180443_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180443 /DEF=Caenorhabditis elegans cDNA clone:yk607d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060342 NCBI Caenorhabditis elegans MUS (Drosophila mutagen sensitive) related family member (mus-101) (mus-101) mRNA, complete cds. 11/11 A 
SNAP00000007525 ENSEMBL cdna:SNAP chromosome:CEL140:I:10487541:10493084:-1 11/11 None
GENEFINDER00000007531 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10487541:10493084:-1 11/11 None
F37D6.1 ENSEMBL cdna:known chromosome:CEL140:I:10487434:10493770:-1 gene:F37D6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10487400-10487716(-) 89.67 89.67
Public Domain and Genome References
Gene Title BRCA1 C Terminus (BRCT) domain (4 domains)
Gene Symbol mus-101
Ensembl F37D6.1
Entrez Gene 172929 Entrez gene
SwissProt Q20129 EMBL-EBI
WormBase CE32652 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99847 Hypothetical protein F37D6.1 [Caenorhabditis elegans] ref|NP_492743.2| MUS (Drosophila mutagen sensitive) related family member (mus-101) [Caenorhabditis elegans] 0.0
blast CAE58953 Hypothetical protein CBG02221 [Caenorhabditis briggsae] 0.0
blast AAQ22476 RE28166p [Drosophila melanogaster] 4.0E-27
blast AAQ22476 RE28166p [Drosophila melanogaster] 5.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 1.9E-14
Pfam IPR001357 EMBL-EBI BRCT 1.1E-7
Pfam IPR001357 EMBL-EBI BRCT 1.5E-13
Pfam IPR001357 EMBL-EBI BRCT 1.7E-5
Pfam IPR001357 EMBL-EBI BRCT 2.2E-5
Pfam IPR001357 EMBL-EBI BRCT 7.7E-10
Pfam IPR001357 EMBL-EBI BRCT 0.0043
Pfam IPR001357 EMBL-EBI BRCT 1.5E-13
Pfam IPR001357 EMBL-EBI BRCT 1.7E-5
Pfam IPR001357 EMBL-EBI BRCT 2.2E-5
Pfam IPR001357 EMBL-EBI BRCT 7.7E-10
Pfam IPR001357 EMBL-EBI BRCT 1.9E-14
Pfam IPR001357 EMBL-EBI BRCT 1.1E-7
Pfam IPR001357 EMBL-EBI BRCT 1.5E-13
Pfam IPR001357 EMBL-EBI BRCT 1.7E-5
Pfam IPR001357 EMBL-EBI BRCT 2.2E-5
Pfam IPR001357 EMBL-EBI BRCT 7.7E-10
Sequence
Target Sequence 
>C. ELEGANS:173077_S_AT
agtatctacacttaagcctaacattgttttggcatccaaagagttcccatggaatcctca
gagcgctgtgttgctgaaacgtgataatattccgatctacgtcttcgacatcctttacga
cttcctaatcgacagagataatctaaatcgaaccaagttttggcataatgtctacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATCTACACTTAAGCCTAACATT 276 63 26 Antisense
AAGCCTAACATTGTTTTGGCATCCA 316 149 39 Antisense
TTTGGCATCCAAAGAGTTCCCATGG 17 667 53 Antisense
AGTTCCCATGGAATCCTCAGAGCGC 225 65 67 Antisense
TGGAATCCTCAGAGCGCTGTGTTGC 349 547 75 Antisense
GAGCGCTGTGTTGCTGAAACGTGAT 99 387 86 Antisense
GAAACGTGATAATATTCCGATCTAC 175 357 101 Antisense
ATATTCCGATCTACGTCTTCGACAT 368 19 112 Antisense
TTCGACATCCTTTACGACTTCCTAA 457 695 129 Antisense
TACGACTTCCTAATCGACAGAGATA 685 647 141 Antisense
CAAGTTTTGGCATAATGTCTACATG 300 185 179 Antisense
Sequence Source Affymetrix Proprietary Database