[Home] | [Total List]

[173076_s_at] AMP-activated protein kinase

Description AV183540_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183540 /DEF=Caenorhabditis elegans cDNA clone:yk653a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 26      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 60      6grp_total > 25      4grp_total > 16      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 653.3
(-3)
P 		684
(-1.1)
P 		740.1
(2.4)
P 		750.3
(3)
P 		97
B 705.3
(-3)
P 		739.6
(-1.5)
P 		751.4
(-0.9)
P 		838.2
(3)
P 		133
C 644.5
(-3)
P 		698.9
(-1.7)
P 		755.9
(-0.4)
P 		899.3
(3)
P 		255
avr 667.7
(-3) 		707.5
(-1.5) 		749.1
(0) 		829.3
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 572.5
(3)
P 		399.3
(-0.6)
P 		409.8
(-0.4)
P 		339.1
(-1.9)
P 		338.3
(-1.9)
P 		285.1
(-3)
P 		287
B 565.6
(3)
P 		488.2
(0.8)
P 		426.9
(-0.9)
P 		382.4
(-2.2)
P 		364.8
(-2.7)
P 		354.2
(-3)
P 		211
C 473.3
(1)
P 		580.8
(3)
P 		417.6
(0)
P 		291.8
(-2.3)
P 		250.9
(-3)
P 		411.9
(-0.1)
P 		330
avr 537.1
(3) 		489.4
(1.7) 		418.1
(-0.3) 		337.8
(-2.5) 		318
(-3) 		350.4
(-2.1) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 237.9
(3)
P 		148.5
(-1.2)
P 		193.5
(0.9)
P 		109.8
(-3)
P 		128
B 224.9
(3)
P 		182.7
(-2)
P 		174.1
(-3)
P 		178.6
(-2.5)
P 		51
C 213.4
(0.3)
P 		200.9
(-0.4)
P 		263.4
(3)
P 		151.6
(-3)
P 		112
avr 225.4
(3) 		177.4
(-0.7) 		210.3
(1.8) 		146.7
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 105.5
(-0)
P 		142
(3)
P 		89.3
(-1.4)
P 		86
(-1.6)
P 		102.1
(-0.3)
P 		69.4
(-3)
P 		73
B 196.8
(3)
P 		162.5
(0.8)
P 		103.7
(-2.8)
P 		101.3
(-3)
P 		148.2
(-0.1)
P 		132.1
(-1.1)
P 		96
C 175.4
(2.9)
P 		177.2
(3)
P 		106.3
(-0.6)
P 		58.7
(-3)
P 		81.2
(-1.9)
P 		137.9
(1)
P 		119
avr 159.2
(2.9) 		160.6
(3) 		99.8
(-1.6) 		82
(-3) 		110.5
(-0.8) 		113.1
(-0.6) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173076_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26862
Sequence Type Exemplar sequence
Representative Public ID AV183540 NCBI
Target Description AV183540_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183540 /DEF=Caenorhabditis elegans cDNA clone:yk653a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078324 NCBI Caenorhabditis elegans T20F7.6 (T20F7.6) mRNA, complete cds. 11/11 None
T20F7.6.1 ENSEMBL cdna:known chromosome:CEL140:X:16865628:16868944:-1 gene:T20F7.6 11/11 A 
T20F7.6.2 ENSEMBL cdna:known chromosome:CEL140:X:16865994:16869296:-1 gene:T20F7.6 11/11 A 
T20F7.6.3 ENSEMBL cdna:known chromosome:CEL140:X:16866006:16868949:-1 gene:T20F7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16866052-16866271(-) 90.42 90.42
Public Domain and Genome References
Gene Title AMP-activated protein kinase
Ensembl T20F7.6
Entrez Gene 181736 Entrez gene
SwissProt O02168 EMBL-EBI
WormBase CE29350 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18981 Hypothetical protein T20F7.6 [Caenorhabditis elegans] ref|NP_510725.1| T20F7.6 [Caenorhabditis elegans] 0.0
blast T25899 hypothetical protein T20F7.6 - Caenorhabditis elegans 0.0
blast CAE69907 Hypothetical protein CBG16259 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000644 EMBL-EBI CBS domain 0.0035
Pfam IPR000644 EMBL-EBI CBS domain 1.0E-7
Pfam IPR000644 EMBL-EBI CBS domain 2.7E-5
Pfam IPR000644 EMBL-EBI CBS domain 3.5E-10
Sequence
Target Sequence 
>C. ELEGANS:173076_S_AT
cttgccttgccataggattttccttttctcttcttttttccccatcttcacgtttaggca
tattttcatcgtctcattgattagagctaaattgtcaaaaaaaaaattctctgacctgaa
agcagcaacttgtgatatacatattcctaagtcattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCCTTGCCATAGGATTTTCCTT 22 217 63 Antisense
GCCATAGGATTTTCCTTTTCTCTTC 341 277 71 Antisense
CATAGGATTTTCCTTTTCTCTTCTT 116 215 73 Antisense
CCCCATCTTCACGTTTAGGCATATT 611 261 102 Antisense
TTAGGCATATTTTCATCGTCTCATT 590 681 116 Antisense
GCATATTTTCATCGTCTCATTGATT 111 309 120 Antisense
TTCATCGTCTCATTGATTAGAGCTA 299 687 127 Antisense
AAAATTCTCTGACCTGAAAGCAGCA 624 133 165 Antisense
CTCTGACCTGAAAGCAGCAACTTGT 537 231 171 Antisense
GAAAGCAGCAACTTGTGATATACAT 73 361 180 Antisense
GATATACATATTCCTAAGTCATTCG 328 425 196 Antisense
Sequence Source Affymetrix Proprietary Database