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[173074_at]

Description AV180306_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180306 /DEF=Caenorhabditis elegans cDNA clone:yk605e4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 250.7
(-1.9)
P 		262.2
(-1.4)
P 		222.6
(-3)
P 		370.6
(3)
P 		148
B 296.9
(-1.4)
P 		270.1
(-2.5)
P 		258.3
(-3)
P 		404.6
(3)
P 		146
C 302.6
(-1.8)
P 		269.5
(-3)
P 		294.2
(-2.1)
P 		433.1
(3)
P 		164
avr 283.4
(-2) 		267.3
(-2.6) 		258.4
(-3) 		402.8
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 276.4
(-0.5)
P 		217.9
(-2.4)
P 		200.1
(-3)
P 		291.8
(0)
P 		306.1
(0.5)
P 		383.1
(3)
P 		183
B 268.5
(-2.9)
P 		267.4
(-3)
P 		305.7
(-1.2)
P 		273.1
(-2.7)
P 		318.8
(-0.6)
P 		398.4
(3)
P 		131
C 267.8
(-2.2)
P 		248.9
(-2.7)
P 		272.8
(-2.1)
P 		236.6
(-3)
P 		302.6
(-1.3)
P 		474.6
(3)
P 		238
avr 270.9
(-2.1) 		244.7
(-3) 		259.5
(-2.5) 		267.2
(-2.2) 		309.2
(-0.8) 		418.7
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 91.3
(3)
P 		56.9
(-2.6)
P 		58.2
(-2.4)
P 		54.2
(-3)
P 		37
B 94.7
(3)
P 		66.7
(-1.8)
P 		59.9
(-3)
P 		86.2
(1.5)
P 		35
C 100.2
(2.5)
P 		77.5
(-2.1)
P 		102.5
(3)
P 		73
(-3)
P 		30
avr 95.4
(3) 		67
(-3) 		73.5
(-1.6) 		71.1
(-2.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 50.9
(-2.1)
P 		77.5
(1.1)
P 		43.6
(-3)
P 		74
(0.7)
P 		92.4
(2.9)
P 		93.3
(3)
P 		50
B 93.4
(-1.3)
P 		89
(-1.7)
P 		74.2
(-2.9)
P 		72.3
(-3)
P 		129.5
(1.5)
P 		148.6
(3)
P 		76
C 99.3
(-0.2)
P 		76
(-1.5)
P 		69.4
(-1.8)
P 		47.6
(-3)
P 		97.9
(-0.3)
P 		158.9
(3)
P 		111
avr 81.2
(-1.4) 		80.8
(-1.4) 		62.4
(-3) 		64.6
(-2.8) 		106.6
(0.7) 		133.6
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26692
Sequence Type Exemplar sequence
Representative Public ID AV180306 NCBI
Target Description AV180306_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180306 /DEF=Caenorhabditis elegans cDNA clone:yk605e4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027757 NCBI Caenorhabditis elegans Y67D2.1a (Y67D2.1) mRNA, complete cds. 11/11 None
Y67D2.1a ENSEMBL cdna:known chromosome:CEL140:III:1570314:1576628:1 gene:Y67D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175311 2 1 NM_001027757 173074_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1576069-1576567(+) 93.67 93.67
Public Domain and Genome References
Ensembl Y67D2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK27890 Hypothetical protein Y67D2.1a [Caenorhabditis elegans] ref|NP_001022928.1| Y67D2.1a [Caenorhabditis elegans] 0.0
blast CAE69183 Hypothetical protein CBG15217 [Caenorhabditis briggsae] 0.0
blast AAP46267 Hypothetical protein Y67D2.1b [Caenorhabditis elegans] ref|NP_001022929.1| Y67D2.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002005 EMBL-EBI Rab GTPase activator 8.0E-22
Pfam IPR002005 EMBL-EBI Rab GTPase activator 8.9E-27
Sequence
Target Sequence 
>C. ELEGANS:173074_AT
aaatgaagtggaaccctactggaagatgagcttcaccgcgaattccatgaaattcgacac
cgccggagccgaaaatgtngtngtcgcgccgccagttgatgcgaatttacactatgctag
tgtggtggaggagtgccgccaactattntgcacaacttggcccgagctcgactttttgcc
aagagccatgaaaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGAAGTGGAACCCTACTGGAAG 291 75 28 Antisense
AGTGGAACCCTACTGGAAGATGAGC 122 59 34 Antisense
GGAAGATGAGCTTCACCGCGAATTC 171 531 48 Antisense
AGCTTCACCGCGAATTCCATGAAAT 308 79 56 Antisense
TTCCATGAAATTCGACACCGCCGGA 510 695 70 Antisense
TCGCGCCGCCAGTTGATGCGAATTT 15 601 111 Antisense
CCGCCAGTTGATGCGAATTTACACT 647 261 116 Antisense
TGATGCGAATTTACACTATGCTAGT 580 565 124 Antisense
GCTAGTGTGGTGGAGGAGTGCCGCC 295 303 143 Antisense
TGTGGTGGAGGAGTGCCGCCAACTA 446 555 148 Antisense
GACTTTTTGCCAAGAGCCATGAAAA 172 373 197 Antisense
Sequence Source Affymetrix Proprietary Database