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[173073_s_at]

Description AV184427_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184427 /DEF=Caenorhabditis elegans cDNA clone:yk664d2 : 3prime end, single read.
Cluster 6grp_total > 49      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 204.4
(2)
P 		243.4
(3)
P 		193
(1.6)
P 		19.9
(-3)
A 		224
B 112.4
(0)
P 		107.6
(-0.2)
A 		194.9
(3)
P 		29.3
(-3)
A 		166
C 226.6
(2.9)
P 		170.9
(0.8)
A 		230.2
(3)
P 		67.7
(-3)
A 		163
avr 181.1
(2.1) 		174
(1.9) 		206
(3) 		39
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 108.9
(0.6)
P 		95.1
(-0)
A 		31.3
(-3)
A 		41.2
(-2.5)
A 		132
(1.7)
P 		159
(3)
P 		128
B 113.6
(1.8)
P 		54.7
(-1.1)
A 		47.7
(-1.5)
A 		16.1
(-3)
A 		101.7
(1.2)
P 		138.5
(3)
P 		122
C 120.6
(1.3)
P 		68.3
(-0.7)
M 		71.7
(-0.5)
A 		7.4
(-3)
A 		63.4
(-0.9)
P 		164.4
(3)
P 		157
avr 114.4
(1.2) 		72.7
(-0.7) 		50.2
(-1.7) 		21.6
(-3) 		99
(0.5) 		154
(3) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 74.4
(3)
P 		52.8
(1.2)
P 		50.5
(1)
P 		2.9
(-3)
A 		72
B 35.8
(1.6)
P 		26.6
(0.1)
A 		45.2
(3)
P 		6.2
(-3)
A 		39
C 75
(2.5)
P 		49.1
(0.3)
A 		80.2
(3)
P 		11.4
(-3)
A 		69
avr 61.7
(3) 		42.8
(0.9) 		58.6
(2.7) 		6.8
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 20.1
(-0.6)
P 		33.8
(1.9)
A 		6.8
(-3)
A 		10.5
(-2.3)
A 		39.8
(3)
P 		38.7
(2.8)
P 		33
B 39.5
(1.5)
P 		18.2
(-1.2)
A 		11.6
(-2.1)
A 		4.3
(-3)
A 		41.3
(1.7)
P 		51.7
(3)
P 		47
C 44.7
(1.8)
P 		20.9
(-0.8)
M 		18.2
(-1.1)
A 		1.5
(-3)
A 		20.5
(-0.9)
P 		55
(3)
P 		54
avr 34.8
(1.1) 		24.3
(-0.4) 		12.2
(-2.1) 		5.4
(-3) 		33.9
(1) 		48.5
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173073_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26874
Sequence Type Exemplar sequence
Representative Public ID AV184427 NCBI
Target Description AV184427_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV184427 /DEF=Caenorhabditis elegans cDNA clone:yk664d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182190(11), NM_061442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182190 NCBI Caenorhabditis elegans T07D3.9b (T07D3.9) mRNA, complete cds. 11/11 A 
NM_061442 NCBI Caenorhabditis elegans T07D3.9a (T07D3.9) mRNA, complete cds. 11/11 A 
SNAP00000029311 ENSEMBL cdna:SNAP chromosome:CEL140:II:898202:900734:-1 11/11 None
GENEFINDER00000029313 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:898182:900734:-1 11/11 None
T07D3.9b ENSEMBL cdna:known chromosome:CEL140:II:898065:900741:-1 gene:T07D3.9 11/11 A 
T07D3.9a.3 ENSEMBL cdna:known chromosome:CEL140:II:898074:900747:-1 gene:T07D3.9 11/11 None
T07D3.9a.2 ENSEMBL cdna:known chromosome:CEL140:II:898074:900743:-1 gene:T07D3.9 11/11 None
T07D3.9a.1 ENSEMBL cdna:known chromosome:CEL140:II:898074:900741:-1 gene:T07D3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:898263-898554(-) 75.67 75.67
Public Domain and Genome References
Ensembl T07D3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38605 Hypothetical protein T07D3.9b [Caenorhabditis elegans] ref|NP_871990.1| T07D3.9b [Caenorhabditis elegans] 0.0
blast AAB66189 Hypothetical protein T07D3.9a [Caenorhabditis elegans] ref|NP_493843.2| T07D3.9a [Caenorhabditis elegans] 0.0
blast CAE62947 Hypothetical protein CBG07159 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 1.7E-9
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 1.7E-9
Pfam IPR006683 EMBL-EBI Thioesterase superfamily 1.7E-9
Sequence
Target Sequence 
>C. ELEGANS:173073_S_AT
aaattgggcatgtcctgcactttgactcattcgtcacatacaccgatggaaaatatgtgc
aggtgaaggtagcggcgacgatttcggatcagcacaagctccccgagctcgccaagttga
atcatccgacgctcggtgaagaggctcgcgtcaacacaaatgtgttcaacttcacgatgg
aaagcgtcgagaatccgaatgtgctccgtgtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGGGCATGTCCTGCACTTTGA 275 115 13 Antisense
TCCTGCACTTTGACTCATTCGTCAC 51 595 25 Antisense
CTCATTCGTCACATACACCGATGGA 227 229 38 Antisense
GTGCAGGTGAAGGTAGCGGCGACGA 496 479 69 Antisense
AAGGTAGCGGCGACGATTTCGGATC 293 159 78 Antisense
CGATTTCGGATCAGCACAAGCTCCC 29 249 91 Antisense
GTTGAATCATCCGACGCTCGGTGAA 680 437 128 Antisense
CCGACGCTCGGTGAAGAGGCTCGCG 49 263 138 Antisense
AGGCTCGCGTCAACACAAATGTGTT 444 53 154 Antisense
AAATGTGTTCAACTTCACGATGGAA 187 121 170 Antisense
AGAATCCGAATGTGCTCCGTGTGGT 482 75 202 Antisense
Sequence Source Affymetrix Proprietary Database