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[173072_at]

Description AV180263_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180263 /DEF=Caenorhabditis elegans cDNA clone:yk604h8 : 3prime end, single read.
Cluster 6grp_total > 09      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 4.6
(-3)
A 		17.6
(-0.8)
A 		8.1
(-2.4)
A 		40.6
(3)
A 		36
B 2.2
(-3)
A 		8.6
(0.4)
A 		13.5
(3)
A 		12
(2.2)
A 		11
C 5.6
(-2.3)
A 		4.9
(-2.5)
A 		2.5
(-3)
A 		29
(3)
A 		27
avr 4.1
(-3) 		10.4
(-1.4) 		8
(-2) 		27.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 6.6
(-2.4)
A 		4.3
(-2.7)
A 		5.3
(-2.6)
A 		46.1
(3)
A 		2.3
(-3)
A 		4.3
(-2.7)
A 		44
B 26.4
(3)
A 		8.3
(-1.5)
A 		8.6
(-1.4)
A 		2.3
(-3)
A 		2.5
(-3)
A 		2.4
(-3)
A 		24
C 47.1
(3)
A 		3.8
(-3)
A 		6.7
(-2.6)
A 		10.9
(-2)
A 		19.7
(-0.8)
A 		6.6
(-2.6)
A 		43
avr 26.7
(3) 		5.5
(-2.7) 		6.9
(-2.3) 		19.8
(1.1) 		8.2
(-2) 		4.4
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-3)
A 		3.8
(-0)
A 		2.1
(-2.4)
A 		5.9
(3)
A 		4
B 0.7
(-3)
A 		2.1
(0.5)
A 		3.1
(3)
A 		2.6
(1.8)
A 		2
C 1.9
(-1.5)
A 		1.4
(-2.3)
A 		0.9
(-3)
A 		4.9
(3)
A 		4
avr 1.4
(-3) 		2.4
(-1.1) 		2
(-1.8) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		1.5
(-2.6)
A 		1.2
(-2.7)
A 		11.7
(3)
A 		0.7
(-3)
A 		1
(-2.8)
A 		11
B 9.2
(3)
A 		2.8
(-1.5)
A 		2.1
(-2)
A 		0.6
(-3)
A 		1
(-2.7)
A 		0.9
(-2.8)
A 		9
C 17.5
(3)
A 		1.2
(-3)
A 		1.7
(-2.8)
A 		2.2
(-2.6)
A 		6.4
(-1.1)
A 		2.2
(-2.6)
A 		16
avr 9.3
(3) 		1.8
(-2.7) 		1.7
(-2.8) 		4.8
(-0.4) 		2.7
(-2) 		1.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26690
Sequence Type Exemplar sequence
Representative Public ID AV180263 NCBI
Target Description AV180263_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180263 /DEF=Caenorhabditis elegans cDNA clone:yk604h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV180263
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV180263 AV180263_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV180263 /DEF=Caenorhabditis elegans cDNA clone:yk604h8 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1374574-1374874(+) 96.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:173072_AT
taatttgttttttcacagcgctcgggcatcggcccaccccggntccgtaccaacctagct
gggcactacttctggcgatatggcatccggctgcggaccccaacctggtatatgtccgcg
gggacgaggcccatatgttcccatcagaacttatggatattatttaatgcaagtgatttt
ttttgcaaaatgccactttcgtaaggattgaagaggcgattatgttccaattgaaccacg
aaaaat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTTGTTTTTTCACAGCGCTCGG 511 635 23 Antisense
GGCACTACTTCTGGCGATATGGCAT 620 535 84 Antisense
CTACTTCTGGCGATATGGCATCCGG 690 223 88 Antisense
GCGGACCCCAACCTGGTATATGTCC 587 293 115 Antisense
CCCAACCTGGTATATGTCCGCGGGG 70 1 121 Antisense
GTATATGTCCGCGGGGACGAGGCCC 421 453 130 Antisense
GCCCATATGTTCCCATCAGAACTTA 525 285 151 Antisense
TTTTGCAAAATGCCACTTTCGTAAG 586 669 203 Antisense
AATGCCACTTTCGTAAGGATTGAAG 556 165 211 Antisense
GAAGAGGCGATTATGTTCCAATTGA 339 337 232 Antisense
ATGTTCCAATTGAACCACGAAAAAT 405 47 244 Antisense
Sequence Source Affymetrix Proprietary Database