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[173069_at]

Description AV183153_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183153 /DEF=Caenorhabditis elegans cDNA clone:yk647c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 71      6grp_total > 28      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 552.2
(3)
P 		263
(-3)
P 		285.3
(-2.5)
P 		423.1
(0.3)
P 		289
B 501.9
(3)
P 		316.5
(-2.4)
P 		297.3
(-3)
P 		449.8
(1.5)
P 		205
C 489.8
(3)
P 		278.2
(-3)
P 		308.7
(-2.1)
P 		443.9
(1.7)
P 		212
avr 514.6
(3) 		285.9
(-3) 		297.1
(-2.7) 		438.9
(1) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 587.7
(3)
P 		356.9
(-1)
P 		244.2
(-3)
P 		244
(-3)
P 		377.1
(-0.7)
P 		323.2
(-1.6)
P 		344
B 424.3
(3)
P 		379.2
(1.1)
P 		282.1
(-3)
P 		413
(2.5)
P 		311
(-1.8)
P 		381.7
(1.2)
P 		142
C 395.3
(3)
P 		380
(2.2)
P 		280.6
(-3)
P 		311.4
(-1.4)
P 		283.9
(-2.8)
P 		341.5
(0.2)
P 		115
avr 469.1
(3) 		372
(0.1) 		269
(-3) 		322.8
(-1.4) 		324
(-1.4) 		348.8
(-0.6) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 201
(3)
P 		57.1
(-3)
P 		74.6
(-2.3)
P 		61.9
(-2.8)
P 		144
B 160.1
(3)
P 		78.2
(-2.4)
P 		68.9
(-3)
P 		95.8
(-1.2)
P 		91
C 162.1
(3)
P 		80
(-2.6)
P 		107.6
(-0.7)
P 		74.8
(-3)
P 		87
avr 174.4
(3) 		71.8
(-3) 		83.7
(-2.3) 		77.5
(-2.7) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 108.3
(1.5)
P 		126.9
(3)
P 		53.2
(-3)
P 		61.9
(-2.3)
P 		113.8
(1.9)
P 		78.7
(-0.9)
P 		74
B 147.6
(3)
P 		126.2
(1.4)
P 		68.5
(-3)
P 		109.4
(0.1)
P 		126.4
(1.4)
P 		142.3
(2.6)
P 		79
C 146.5
(3)
P 		116
(0.8)
P 		71.4
(-2.4)
P 		62.6
(-3)
P 		91.9
(-0.9)
P 		114.3
(0.7)
P 		84
avr 134.1
(3) 		123
(2) 		64.4
(-3) 		78
(-1.8) 		110.7
(1) 		111.8
(1.1) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26844
Sequence Type Exemplar sequence
Representative Public ID AV183153 NCBI
Target Description AV183153_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=AV183153 /DEF=Caenorhabditis elegans cDNA clone:yk647c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075686(11), NM_075687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075686 NCBI Caenorhabditis elegans M02E1.1a (M02E1.1) mRNA, complete cds. 11/11 None
NM_075687 NCBI Caenorhabditis elegans M02E1.1b (M02E1.1) mRNA, complete cds. 11/11 None
M02E1.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:325962:334587:1 gene:M02E1.1 11/11 None
M02E1.1a ENSEMBL cdna:known chromosome:CEL140:X:325962:334587:1 gene:M02E1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:334241-334503(+) 87.0 87.0
Public Domain and Genome References
Ensembl M02E1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51499 Hypothetical protein M02E1.1a [Caenorhabditis elegans] ref|NP_508087.2| M02E1.1a [Caenorhabditis elegans] 0.0
blast T25836 hypothetical protein M02E1.1 - Caenorhabditis elegans 0.0
blast AAM51500 Hypothetical protein M02E1.1b [Caenorhabditis elegans] ref|NP_508088.2| M02E1.1b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173069_AT
atgactcatggttattttcttctttgcaacttcacagttctctcacccatcaatttctct
gagtttaacgatgcatttgtgtcattatcttatcctatcgctctccctctctctatctgt
gtcaccttcttccacatttgtatttccccggtactgataaaatccgattaaaaaaaaatt
acatttcaattgtcttttttcgatcgttcccctgtatttgtttctttatgcaacttgatc
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTCATGGTTATTTTCTTCTTT 506 45 15 Antisense
ATTTTCTTCTTTGCAACTTCACAGT 152 15 28 Antisense
CTTTGCAACTTCACAGTTCTCTCAC 337 223 36 Antisense
TCTCTCACCCATCAATTTCTCTGAG 184 613 53 Antisense
CTGAGTTTAACGATGCATTTGTGTC 706 237 73 Antisense
TTGTGTCATTATCTTATCCTATCGC 552 705 91 Antisense
TCACCTTCTTCCACATTTGTATTTC 54 627 136 Antisense
ACATTTGTATTTCCCCGGTACTGAT 257 105 148 Antisense
TCAATTGTCTTTTTTCGATCGTTCC 119 635 200 Antisense
TTCCCCTGTATTTGTTTCTTTATGC 363 699 221 Antisense
TTGTTTCTTTATGCAACTTGATCTC 374 705 232 Antisense
Sequence Source Affymetrix Proprietary Database