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[173068_at] protein kinase

Description CEK023E1R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32918 /DEF=C.elegans cDNA clone yk23e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 22      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 1000.8
(3)
P 		374.1
(-1.9)
P 		240.6
(-3)
P 		856.9
(1.9)
P 		760
B 984.7
(2.9)
P 		269.9
(-2.4)
P 		196.5
(-3)
P 		997.1
(3)
P 		801
C 954.8
(3)
P 		306.4
(-2.8)
P 		280.2
(-3)
P 		824.6
(1.8)
P 		675
avr 980.1
(3) 		316.8
(-2.4) 		239.1
(-3) 		892.9
(2.3) 		741

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 831.7
(3)
P 		501.4
(-0.8)
P 		340.7
(-2.6)
P 		310.2
(-3)
P 		405.8
(-1.9)
P 		495.4
(-0.9)
P 		522
B 651.6
(3)
P 		610.4
(2.3)
P 		403.5
(-1.3)
P 		418.3
(-1)
P 		301.7
(-3)
P 		488.3
(0.2)
P 		350
C 651.7
(3)
P 		591.2
(2.1)
P 		343.7
(-1.7)
P 		401.5
(-0.8)
P 		257.1
(-3)
P 		547.5
(1.4)
P 		395
avr 711.7
(3) 		567.7
(0.8) 		362.6
(-2.4) 		376.7
(-2.2) 		321.5
(-3) 		510.4
(-0.1) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 364.4
(3)
P 		81.2
(-2.6)
P 		62.9
(-3)
P 		125.4
(-1.8)
P 		302
B 314
(3)
P 		66.6
(-2.5)
P 		45.5
(-3)
P 		212.5
(0.7)
P 		269
C 316.1
(3)
P 		88.1
(-3)
P 		97.7
(-2.7)
P 		139
(-1.7)
P 		228
avr 331.5
(3) 		78.6
(-2.8) 		68.7
(-3) 		159
(-0.9) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 153.3
(1.6)
P 		178.3
(3)
P 		74.2
(-3)
P 		78.7
(-2.7)
P 		122.4
(-0.2)
P 		120.6
(-0.3)
P 		104
B 226.7
(3)
P 		203.2
(1.9)
P 		98
(-3)
P 		110.8
(-2.4)
P 		122.6
(-1.9)
P 		182.1
(0.9)
P 		129
C 241.5
(3)
P 		180.4
(0.7)
P 		87.5
(-2.7)
P 		80.7
(-3)
P 		83.2
(-2.9)
P 		183.3
(0.8)
P 		161
avr 207.2
(3) 		187.3
(2) 		86.6
(-3) 		90.1
(-2.8) 		109.4
(-1.9) 		162
(0.8) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27382
Sequence Type Exemplar sequence
Representative Public ID CEK023E1R NCBI
Target Description CEK023E1R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32918 /DEF=C.elegans cDNA clone yk23e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072284(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072284 NCBI Caenorhabditis elegans Suppressor of Constitutive Dauer formation family member (scd-2) (scd-2) mRNA, complete cds. 10/11 None
T10H9.2 ENSEMBL cdna:known chromosome:CEL140:V:6635863:6642252:1 gene:T10H9.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6641994-6642247(+) 79.43 79.43
Public Domain and Genome References
Gene Title protein kinase
Gene Symbol scd-2
Ensembl T10H9.2
Entrez Gene 179054 Entrez gene
SwissProt O76411 EMBL-EBI
WormBase CE36566 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504685 Suppressor of Constitutive Dauer formation family member (scd-2) [Caenorhabditis elegans] gb|AAC19236.2| Suppressor of constitutive dauer formation protein 2 [Caenorhabditis elegans] 0.0
blast CAE71919 Hypothetical protein CBG18982 [Caenorhabditis briggsae] 0.0
blast T30107 hypothetical protein F44C4.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504685.2 2 7-29,928-950
T10H9.2 2 7-29,928-950
Sequence
Target Sequence 
>C. ELEGANS:173068_AT
gacaaacccgctgatctattttttttgtaccatctgtgaccaaaatgggtgttctagcca
tcgggtcttgtccagttatattatcatgatctctcccccatctgtgtgtatgtttccaaa
ttccgattcatcacatatccactcctcggaacaaagcatactcattttaggtatcttttt
ccgttcagtcatctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAACCCGCTGATCTATTTTTTT 119 365 83 Antisense
ATTTTTTTTGTACCATCTGTGACCA 202 15 100 Antisense
AATGGGTGTTCTAGCCATCGGGTCT 478 163 126 Antisense
CCATCGGGTCTTGTCCAGTTATATT 513 271 140 Antisense
TTATATTATCATGATCTCTCCCCCA 657 679 158 Antisense
CCCCCATCTGTGTGTATGTTTCCAA 681 259 177 Antisense
GTGTATGTTTCCAAATTCCGATTCA 453 485 188 Antisense
AATTCCGATTCATCACATATCCACT 2 179 201 Antisense
ACATATCCACTCCTCGGAACAAAGC 700 103 215 Antisense
TACTCATTTTAGGTATCTTTTTCCG 116 647 241 Antisense
ATCTTTTTCCGTTCAGTCATCTGAA 291 29 255 Antisense
Sequence Source Affymetrix Proprietary Database