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[173067_at]

Description CEK016D7R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27644 /DEF=C.elegans cDNA clone yk16d7 : 3prime end, single read.
Cluster 6grp_total > 28      4grp_total > 29      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 217.5
(2.2)
P 		183.1
(1.1)
A 		47.8
(-3)
A 		243.8
(3)
P 		196
B 226.8
(3)
P 		131.3
(-0.9)
A 		81.6
(-3)
A 		144
(-0.4)
P 		145
C 205.3
(1.9)
A 		179.4
(0.8)
A 		86.8
(-3)
A 		232.6
(3)
P 		146
avr 216.5
(3) 		164.6
(0.8) 		72.1
(-3) 		206.8
(2.6) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 288.1
(3)
P 		117.8
(-2.9)
P 		115.8
(-3)
A 		136.2
(-2.3)
P 		136.7
(-2.3)
P 		165.7
(-1.3)
P 		172
B 170.8
(3)
P 		144.1
(1.4)
P 		71
(-3)
A 		117.5
(-0.2)
A 		118.4
(-0.2)
P 		111.7
(-0.6)
P 		100
C 101.5
(1.3)
P 		98.3
(1.1)
P 		49.9
(-3)
A 		53.1
(-2.7)
A 		100.8
(1.3)
A 		121.2
(3)
P 		71
avr 186.8
(3) 		120.1
(-0.7) 		78.9
(-3) 		102.3
(-1.7) 		118.6
(-0.8) 		132.9
(0) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 79.2
(3)
P 		39.8
(-0.5)
A 		12.5
(-3)
A 		35.7
(-0.9)
P 		67
B 72.3
(3)
P 		32.4
(-1.5)
A 		18.9
(-3)
A 		30.7
(-1.7)
P 		53
C 68
(3)
A 		51.6
(0.4)
A 		30.2
(-3)
A 		39.2
(-1.6)
P 		38
avr 73.2
(3) 		41.3
(-0.6) 		20.5
(-3) 		35.2
(-1.3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 53.1
(3)
P 		41.9
(0.6)
P 		25.2
(-3)
A 		34.5
(-1)
P 		41.3
(0.5)
P 		40.3
(0.2)
P 		28
B 59.4
(3)
P 		48
(1.4)
P 		17.2
(-3)
A 		31.1
(-1)
A 		48.1
(1.4)
P 		41.7
(0.5)
P 		42
C 37.6
(2.4)
P 		30
(0.9)
P 		12.7
(-2.6)
A 		10.7
(-3)
A 		32.6
(1.4)
A 		40.6
(3)
P 		30
avr 50
(3) 		40
(1.1) 		18.4
(-3) 		25.4
(-1.7) 		40.7
(1.2) 		40.9
(1.3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27370
Sequence Type Exemplar sequence
Representative Public ID CEK016D7R NCBI
Target Description CEK016D7R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27644 /DEF=C.elegans cDNA clone yk16d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK016D7R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK016D7R CEK016D7R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27644 /DEF=C.elegans cDNA clone yk16d7 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058423 7/11 Cross Hyb Matching Probes None
GENEFINDER00000040550 4/11 Cross Hyb Matching Probes None
SNAP00000040524 3/11 Cross Hyb Matching Probes None
Y48G8AL.9 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1136379-1136730(-) 96.9 97.18
Sequence
Target Sequence 
>C. ELEGANS:173067_AT
cggacgcacccatgatgtcagttgacccgtaatctcggaatgtccaacaatgnacgcaat
ccaaacgcgaaacttccgaattcaactgtaaactgtgtggaacacgattcctcgacatgg
acccccttctcacacacatccggcaggaacacgatgagcagcccgttattccgccgagac
ctgttgcgcatactgctccgattaattgaattttcaaattttagaacctatttttttagc
atactttagcatatatttgatctcctcacatttttacgcggttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGACGCACCCATGATGTCAGTTGA 444 243 22 Antisense
GATGTCAGTTGACCCGTAATCTCGG 385 409 35 Antisense
GACCCGTAATCTCGGAATGTCCAAC 535 379 45 Antisense
GCAATCCAAACGCGAAACTTCCGAA 619 283 77 Antisense
AACTTCCGAATTCAACTGTAAACTG 38 137 92 Antisense
GGAACACGATTCCTCGACATGGACC 677 527 120 Antisense
TTCTCACACACATCCGGCAGGAACA 49 691 148 Antisense
AACACGATGAGCAGCCCGTTATTCC 318 135 169 Antisense
GCGCATACTGCTCCGATTAATTGAA 219 287 207 Antisense
TTTAGCATATATTTGATCTCCTCAC 208 673 266 Antisense
ATCTCCTCACATTTTTACGCGGTTT 635 31 281 Antisense
Sequence Source Affymetrix Proprietary Database