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[173065_at]

Description CEK016G9R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D26906 /DEF=C.elegans cDNA clone yk16g9 : 3prime end, single read.
Cluster 6grp_total > 03      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 265.8
(3)
A 		161.6
(-2.1)
A 		151.5
(-2.6)
A 		142.6
(-3)
A 		123
B 173.9
(-1.6)
A 		208.4
(3)
A 		164.1
(-2.9)
A 		163.6
(-3)
A 		45
C 246.9
(3)
M 		202
(-2.6)
A 		221.1
(-0.2)
M 		198.8
(-3)
P 		48
avr 228.9
(3) 		190.7
(-0.8) 		178.9
(-2) 		168.3
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 272.6
(3)
A 		249.8
(1)
A 		224.5
(-1.3)
A 		205.8
(-3)
A 		231.5
(-0.7)
A 		233.8
(-0.5)
A 		67
B 346.6
(3)
A 		302.2
(0.5)
M 		240.1
(-3)
A 		309.2
(0.9)
A 		259.2
(-1.9)
M 		281.8
(-0.7)
P 		107
C 195.8
(-2.9)
P 		325.7
(2.5)
A 		228.3
(-1.5)
A 		337.8
(3)
A 		192.8
(-3)
A 		234.5
(-1.3)
A 		145
avr 271.7
(1.1) 		292.6
(3) 		231
(-2.7) 		284.3
(2.2) 		227.8
(-3) 		250
(-0.9) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 96.8
(3)
A 		35.1
(-1.9)
A 		39.6
(-1.5)
A 		20.9
(-3)
A 		76
B 55.5
(3)
A 		51.5
(1.8)
A 		38
(-2.1)
A 		34.9
(-3)
A 		21
C 81.7
(3)
M 		58.1
(0.1)
A 		77.1
(2.4)
M 		33.5
(-3)
P 		48
avr 78
(3) 		48.2
(-0.7) 		51.6
(-0.3) 		29.8
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 50.3
(-2.8)
A 		88.8
(3)
A 		48.9
(-3)
A 		52.2
(-2.5)
A 		69.9
(0.2)
A 		56.9
(-1.8)
A 		40
B 120.6
(3)
A 		100.6
(1.1)
M 		58.3
(-3)
A 		81.9
(-0.7)
A 		105.3
(1.5)
M 		105.1
(1.5)
P 		62
C 72.6
(-0.9)
P 		99.4
(3)
A 		58.1
(-3)
A 		67.9
(-1.6)
A 		62.4
(-2.4)
A 		78.5
(-0)
A 		41
avr 81.2
(0.8) 		96.3
(3) 		55.1
(-3) 		67.3
(-1.2) 		79.2
(0.5) 		80.2
(0.7) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27371
Sequence Type Exemplar sequence
Representative Public ID CEK016G9R NCBI
Target Description CEK016G9R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D26906 /DEF=C.elegans cDNA clone yk16g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063500
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063500 NCBI Caenorhabditis elegans T21B10.3 (T21B10.3) mRNA, complete cds. A 
GENEFINDER00000044371 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8934318:8938773:1 None
T21B10.3 ENSEMBL cdna:known chromosome:CEL140:II:8934292:8938934:1 gene:T21B10.3 A 
SNAP00000044365 ENSEMBL cdna:SNAP chromosome:CEL140:II:8935429:8938773:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8938399-8938872(+) 80.94 80.94
Public Domain and Genome References
Gene Title
Ensembl T21B10.3
Entrez Gene 174424 Entrez gene
SwissProt Q22624 EMBL-EBI
WormBase CE23993 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92693 Hypothetical protein T21B10.3 [Caenorhabditis elegans] ref|NP_495901.1| T21B10.3 [Caenorhabditis elegans] 0.0
blast CAE59763 Hypothetical protein CBG03215 [Caenorhabditis briggsae] 0.0
blast CAE63712 Hypothetical protein CBG08229 [Caenorhabditis briggsae] 1.0E-33
blast CAE63712 Hypothetical protein CBG08229 [Caenorhabditis briggsae] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:173065_AT
gaagaaaccgccaataagttcaatggaaactcacggaaacaacccgagagaaacccaaga
tacacttcttcgaacttctacgaacaagatgaagattcactacaactattgaaacctgac
agaaatgagcttgctcagccaatggcccncaatgaccccccaaacctgcccaaacttcgt
cncattgattgaattcgtcgttgagttaacattcccgttgtcttctgtttattgttctca
tacttcntatccaaatttgttatgttgtttttactctattcccct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAACCGCCAATAAGTTCAATG 535 339 67 Antisense
GAGAAACCCAAGATACACTTCTTCG 247 391 114 Antisense
AACCCAAGATACACTTCTTCGAACT 190 147 118 Antisense
CATTGATTGAATTCGTCGTTGAGTT 659 217 249 Antisense
TCGTCGTTGAGTTAACATTCCCGTT 195 605 261 Antisense
TGAGTTAACATTCCCGTTGTCTTCT 107 567 268 Antisense
TAACATTCCCGTTGTCTTCTGTTTA 690 637 273 Antisense
CCGTTGTCTTCTGTTTATTGTTCTC 626 263 281 Antisense
GTTGTCTTCTGTTTATTGTTCTCAT 526 437 283 Antisense
CTTCTGTTTATTGTTCTCATACTTC 200 221 288 Antisense
TATGTTGTTTTTACTCTATTCCCCT 192 657 327 Antisense
Sequence Source Affymetrix Proprietary Database