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[173064_at]

Description CEK015C5R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32425 /DEF=C.elegans cDNA clone yk15c5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 81      6grp_total > 66      4grp_total > 41      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 237.5
(0.7)
P 		282
(2)
P 		314.3
(3)
P 		115.6
(-3)
P 		199
B 179.6
(-3)
P 		252.6
(0.3)
P 		227.1
(-0.9)
P 		313.9
(3)
P 		134
C 177.1
(-3)
P 		265.9
(2.2)
P 		280.2
(3)
P 		232.1
(0.2)
P 		103
avr 198.1
(-3) 		266.8
(2.4) 		273.9
(3) 		220.5
(-1.2) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 240.9
(2.6)
P 		172
(-3)
P 		207.8
(-0.1)
P 		178.4
(-2.5)
P 		246.3
(3)
P 		224.2
(1.2)
P 		74
B 196.2
(-2.9)
P 		309
(3)
P 		220.7
(-1.6)
P 		268.9
(0.9)
P 		194.7
(-3)
P 		308.5
(3)
P 		114
C 260
(-2.6)
P 		265.1
(-2)
P 		270.5
(-1.4)
P 		307.3
(3)
P 		257.7
(-2.9)
P 		256.8
(-3)
P 		51
avr 232.4
(-3) 		248.7
(0.2) 		233
(-2.9) 		251.5
(0.7) 		232.9
(-2.9) 		263.2
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 86.5
(3)
P 		61.2
(0.8)
P 		82.2
(2.6)
P 		16.9
(-3)
P 		70
B 57.3
(-1)
P 		62.4
(1.1)
P 		52.6
(-3)
P 		66.9
(3)
P 		14
C 58.6
(-1)
P 		76.4
(0.8)
P 		97.7
(3)
P 		39.1
(-3)
P 		59
avr 67.5
(1.4) 		66.7
(1.2) 		77.5
(3) 		41
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 44.4
(-3)
P 		61.2
(0.4)
P 		45.2
(-2.8)
P 		45.3
(-2.8)
P 		74.3
(3)
P 		54.6
(-1)
P 		30
B 68.3
(-1.6)
P 		102.8
(1.8)
P 		53.6
(-3)
P 		71.2
(-1.3)
P 		79.1
(-0.5)
P 		115
(3)
P 		61
C 96.4
(3)
P 		80.9
(0.3)
P 		68.8
(-1.8)
P 		61.8
(-3)
P 		83.4
(0.7)
P 		86
(1.2)
P 		35
avr 69.7
(-0.2) 		81.6
(2.3) 		55.9
(-3) 		59.4
(-2.3) 		78.9
(1.7) 		85.2
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27367
Sequence Type Exemplar sequence
Representative Public ID CEK015C5R NCBI
Target Description CEK015C5R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32425 /DEF=C.elegans cDNA clone yk15c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062848
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T24H7.2.2 ENSEMBL cdna:known chromosome:CEL140:II:6247258:6250773:1 gene:T24H7.2 None
T24H7.2.1 ENSEMBL cdna:known chromosome:CEL140:II:6247260:6250790:1 gene:T24H7.2 None
SNAP00000031001 ENSEMBL cdna:SNAP chromosome:CEL140:II:6247265:6250566:1 None
NM_062848 NCBI Caenorhabditis elegans T24H7.2 (T24H7.2) mRNA, complete cds. A 
GENEFINDER00000031005 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6247265:6250566:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6250089-6250779(+) 71.55 81.22
Public Domain and Genome References
Gene Title
Ensembl T24H7.2
Entrez Gene 174033 Entrez gene
SwissProt Q22758 EMBL-EBI
WormBase CE02884 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68352 Hypothetical protein T24H7.2 [Caenorhabditis elegans] ref|NP_495249.1| T24H7.2 [Caenorhabditis elegans] 0.0
blast CAE59272 Hypothetical protein CBG02604 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 2.5E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495249.1 1 7-29
T24H7.2.2 1 7-29
T24H7.2.1 1 7-29
SNAP00000031001 1 7-29
GENEFINDER00000031005 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:173064_AT
atactcgaacccccattgtaggagaaccagagaagtgaagagccggacccagacnaggag
aagggaaagaaaagcgcggagaaagcaaacgagtcggaagtagaaaacgagtcagagata
aagaccgagctttaaattttttgaaaattatattatcatttggagcattctcttcccacg
ggatattttttactcgtttctaaatacttgttcaatctttttctcatgttttccaatgct
ttgggattttaatttattaaaagttcgaatgtgatatgatggtgattactcccatggttg
tatttttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTCGAACCCCCATTGTAGGAGA 372 21 24 Antisense
GAACCCCCATTGTAGGAGAACCAGA 632 343 30 Antisense
AGAGAAGTGAAGAGCCGGACCCAGA 598 69 52 Antisense
AAAAGCGCGGAGAAAGCAAACGAGT 149 129 93 Antisense
AGCATTCTCTTCCCACGGGATATTT 647 77 187 Antisense
TTACTCGTTTCTAAATACTTGTTCA 14 683 213 Antisense
ATACTTGTTCAATCTTTTTCTCATG 168 25 227 Antisense
TCAATCTTTTTCTCATGTTTTCCAA 690 633 235 Antisense
TTTCTCATGTTTTCCAATGCTTTGG 517 671 243 Antisense
GATGGTGATTACTCCCATGGTTGTA 644 405 301 Antisense
GATTACTCCCATGGTTGTATTTTTT 675 429 307 Antisense
Sequence Source Affymetrix Proprietary Database