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[173063_at]

Description CEK017B5R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32460 /DEF=C.elegans cDNA clone yk17b5 : 3prime end, single read.
Cluster 6grp_total > 29      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 106.2
(1.5)
A 		99.7
(0.5)
P 		77.2
(-3)
P 		115.6
(3)
A 		38
B 63.2
(-3)
M 		97.9
(3)
A 		87.4
(1.2)
P 		68.9
(-2)
A 		35
C 38.5
(-3)
A 		80.2
(0.4)
P 		88.1
(1.1)
A 		111.3
(3)
M 		73
avr 69.3
(-3) 		92.6
(1.8) 		84.2
(0.1) 		98.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 66.8
(-1.8)
A 		52.2
(-3)
A 		54.8
(-2.8)
A 		58.5
(-2.5)
P 		127.2
(3)
P 		57.9
(-2.5)
A 		75
B 124.4
(3)
P 		102.5
(1)
A 		76.2
(-1.5)
P 		60.3
(-3)
P 		68.7
(-2.2)
P 		85
(-0.7)
A 		64
C 75.6
(-1.2)
P 		58.2
(-2.9)
A 		119.1
(3)
A 		57.1
(-3)
A 		76.5
(-1.1)
P 		88.7
(0.1)
M 		62
avr 88.9
(2.6) 		71
(-0.7) 		83.4
(1.6) 		58.6
(-3) 		90.8
(3) 		77.2
(0.5) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 38.7
(3)
A 		21.6
(-1.7)
P 		20.2
(-2.1)
P 		16.9
(-3)
A 		22
B 20.1
(0.4)
M 		24.2
(3)
A 		20.3
(0.5)
P 		14.7
(-3)
A 		10
C 12.8
(-3)
A 		23
(0.4)
P 		30.7
(3)
A 		18.8
(-1)
M 		18
avr 23.9
(3) 		22.9
(2.2) 		23.7
(2.8) 		16.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 12.3
(-2.9)
A 		18.5
(-1.5)
A 		11.9
(-3)
A 		14.8
(-2.3)
P 		38.4
(3)
P 		14.1
(-2.5)
A 		27
B 43.3
(3)
P 		34.1
(1)
A 		18.5
(-2.5)
P 		16
(-3)
P 		27.9
(-0.4)
P 		31.7
(0.5)
A 		27
C 28
(2.3)
P 		17.7
(-1)
A 		30.3
(3)
A 		11.5
(-3)
A 		24.7
(1.2)
P 		29.7
(2.8)
M 		19
avr 27.9
(2.1) 		23.4
(0.4) 		20.2
(-0.7) 		14.1
(-3) 		30.3
(3) 		25.2
(1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27372
Sequence Type Exemplar sequence
Representative Public ID CEK017B5R NCBI
Target Description CEK017B5R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32460 /DEF=C.elegans cDNA clone yk17b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072717
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072717 NCBI Caenorhabditis elegans K07C11.9 (K07C11.9) mRNA, complete cds. A 
GENEFINDER00000021033 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8221053:8223795:-1 None
K07C11.9 ENSEMBL cdna:known chromosome:CEL140:V:8220870:8223898:-1 gene:K07C11.9 A 
SNAP00000021028 ENSEMBL cdna:SNAP chromosome:CEL140:V:8221053:8223795:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8220880-8221790(-) 91.86 96.45
Public Domain and Genome References
Gene Title
Ensembl K07C11.9
Entrez Gene 179201 Entrez gene
SwissProt Q21270 EMBL-EBI
WormBase CE07351 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96179 Hypothetical protein K07C11.9 [Caenorhabditis elegans] ref|NP_505118.1| K07C11.9 [Caenorhabditis elegans] sp|Q21270|COG6_CAEEL Putative conserved oligomeric Golgi complex component 0.0
blast CAE56939 Hypothetical protein CBG24784 [Caenorhabditis briggsae] 0.0
blast CAE66102 Hypothetical protein CBG11322 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010490 EMBL-EBI Conserved oligomeric complex COG6 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173063_AT
tattgtaatgttcaccccagtacccttcataatcatgcatcctctggcccaacacttacg
gatatcggacccaccaaattttggcttcgggaagaacggtcaaagaattcgcgaacggaa
atacactggaattcctcaaagtctacaaaatgatagtagatcgtctcggaaatccaacaa
atggctaccgaaaatctccactacctcccgattgaacatgtggaaagtgttctgaaattt
gagaaagagaaggagaatacgccttcgtctaacgaatcggaatcgctcgcttaaatttgt
ttgtaattattatgttcacatatagtttaaattatttatttatttaagtttattgccttt
ataatttcttcggttctaaccttttgaagtgggtttattatgtgatagtaagtgcaattc
ttgttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGTAATGTTCACCCCAGTACCC 355 651 25 Antisense
TCTGGCCCAACACTTACGGATATCG 158 607 67 Antisense
CAACACTTACGGATATCGGACCCAC 349 187 74 Antisense
TACGGATATCGGACCCACCAAATTT 278 647 81 Antisense
TCGGACCCACCAAATTTTGGCTTCG 228 603 89 Antisense
TGGCTTCGGGAAGAACGGTCAAAGA 628 543 106 Antisense
GAATCGCTCGCTTAAATTTGTTTGT 134 329 304 Antisense
GTTTGTAATTATTATGTTCACATAT 13 453 323 Antisense
TCTTCGGTTCTAACCTTTTGAAGTG 410 615 391 Antisense
GAAGTGGGTTTATTATGTGATAGTA 663 335 410 Antisense
GATAGTAAGTGCAATTCTTGTTTTT 446 425 428 Antisense
Sequence Source Affymetrix Proprietary Database