[Home] | [Total List]

[173062_at]

Description CEC3693_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C10369 /DEF=C.elegans cDNA clone yk145a7 : 3prime end, single read.
Cluster 6grp_total > 01      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 27.6
(-3)
A 		40.2
(0.1)
A 		52
(3)
A 		30
(-2.4)
A 		24
B 21.1
(1.3)
A 		6.1
(-3)
A 		7.3
(-2.7)
A 		27.1
(3)
A 		21
C 46
(2.5)
A 		27
(-3)
A 		33.1
(-1.2)
A 		47.6
(3)
A 		21
avr 31.6
(1.1) 		24.4
(-3) 		30.8
(0.7) 		34.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 29.8
(-0.1)
A 		40.7
(1.2)
A 		5.1
(-3)
A 		36.9
(0.8)
A 		55.7
(3)
A 		6.6
(-2.8)
A 		51
B 45.3
(1.9)
A 		32.1
(-0.9)
A 		35.3
(-0.3)
A 		22.3
(-3)
A 		33.8
(-0.6)
A 		50.7
(3)
P 		28
C 3
(-3)
A 		44.6
(3)
P 		44.4
(3)
M 		8.4
(-2.2)
A 		18.4
(-0.8)
A 		21.2
(-0.4)
A 		42
avr 26
(-1.7) 		39.1
(3) 		28.3
(-0.9) 		22.5
(-3) 		36
(1.9) 		26.2
(-1.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.1
(0.7)
A 		8.7
(-0.2)
A 		13.6
(3)
A 		4.4
(-3)
A 		9
B 6.7
(3)
A 		1.5
(-3)
A 		1.7
(-2.8)
A 		5.8
(2)
A 		5
C 15.2
(3)
A 		7.8
(-3)
A 		11.5
(0)
A 		8
(-2.8)
A 		7
avr 10.7
(3) 		6
(-3) 		8.9
(0.7) 		6.1
(-2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.5
(-1.3)
A 		14.5
(2.1)
A 		1.1
(-3)
A 		9.4
(0.2)
A 		16.8
(3)
A 		1.6
(-2.8)
A 		16
B 15.8
(1.6)
A 		10.7
(-0.8)
A 		8.6
(-1.8)
A 		5.9
(-3)
A 		13.7
(0.6)
A 		18.9
(3)
P 		13
C 1.1
(-3)
A 		13.6
(3)
P 		11.3
(1.9)
M 		1.7
(-2.7)
A 		6
(-0.6)
A 		7.1
(-0.1)
A 		13
avr 7.5
(-1.5) 		12.9
(3) 		7
(-1.9) 		5.7
(-3) 		12.2
(2.4) 		9.2
(-0.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27164
Sequence Type Exemplar sequence
Representative Public ID CEC3693 NCBI
Target Description CEC3693_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C10369 /DEF=C.elegans cDNA clone yk145a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC3693
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC3693 CEC3693_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C10369 /DEF=C.elegans cDNA clone yk145a7 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10009379-10010034(+) 76.0 76.0
Sequence
Target Sequence 
>C. ELEGANS:173062_AT
ggcggagaccaatgtcagtgtttcatctgccaatcccatgaaccagtagttgaagtggct
gtattccatgaactttggnccaancgatttgcacaacacattgtatccttccatcggatc
ctttnccttgaagatgttgcaagaggatacaagttnctcagagatgcgctgatccgtgag
aatcgtctgagcttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGAGACCAATGTCAGTGTTTCA 471 541 84 Antisense
TGTCAGTGTTTCATCTGCCAATCCC 240 559 96 Antisense
CATCTGCCAATCCCATGAACCAGTA 56 213 107 Antisense
GCCAATCCCATGAACCAGTAGTTGA 89 279 112 Antisense
GAACCAGTAGTTGAAGTGGCTGTAT 602 345 123 Antisense
AGTGGCTGTATTCCATGAACTTTGG 434 57 137 Antisense
CACAACACATTGTATCCTTCCATCG 360 195 175 Antisense
ACATTGTATCCTTCCATCGGATCCT 171 105 181 Antisense
CTCAGAGATGCGCTGATCCGTGAGA 47 229 240 Antisense
GATGCGCTGATCCGTGAGAATCGTC 377 415 246 Antisense
GATCCGTGAGAATCGTCTGAGCTTT 682 415 254 Antisense
Sequence Source Affymetrix Proprietary Database