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[173061_at]

Description C60111_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C60111 /DEF=C.elegans cDNA clone yk381a11 : 3prime end, single read.
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 28.5
(-0.7)
A 		48.5
(1.6)
P 		9.3
(-3)
A 		60.2
(3)
A 		51
B 33
(2.4)
A 		4
(-3)
A 		28.7
(1.6)
A 		36.2
(3)
A 		32
C 2.5
(-3)
A 		3.3
(-2.8)
A 		33.5
(3)
P 		16.4
(-0.3)
A 		31
avr 21.3
(-2.1) 		18.6
(-3) 		23.8
(-1.4) 		37.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 3.8
(-3)
A 		8.2
(-2)
A 		9.3
(-1.8)
A 		25.9
(1.8)
A 		31.2
(3)
A 		9.5
(-1.8)
A 		27
B 0.9
(-3)
A 		51.9
(3)
A 		8.8
(-2.1)
A 		23.9
(-0.3)
A 		2.4
(-2.8)
A 		21.7
(-0.6)
A 		51
C 17.5
(1.6)
A 		22
(3)
A 		17.8
(1.7)
A 		17.1
(1.5)
A 		12.6
(0.1)
A 		2.5
(-3)
A 		20
avr 7.4
(-3) 		27.4
(3) 		12
(-1.6) 		22.3
(1.5) 		15.4
(-0.6) 		11.2
(-1.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.4
(2.9)
A 		10.5
(3)
P 		2.4
(-3)
A 		8.8
(1.7)
A 		8
B 10.5
(3)
A 		1
(-3)
A 		6.7
(0.6)
A 		7.7
(1.2)
A 		10
C 0.8
(-3)
A 		0.9
(-2.9)
A 		11.7
(3)
P 		2.8
(-1.9)
A 		11
avr 7.2
(3) 		4.1
(-3) 		6.9
(2.4) 		6.4
(1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.9
(-1.5)
A 		2
(-2.1)
A 		6.6
(1.1)
A 		9.4
(3)
A 		2.3
(-1.9)
A 		9
B 0.3
(-3)
A 		17.3
(3)
A 		2.1
(-2.4)
A 		6.3
(-0.9)
A 		1
(-2.8)
A 		8.1
(-0.2)
A 		17
C 6.5
(2.8)
A 		6.7
(3)
A 		4.5
(0.8)
A 		3.4
(-0.4)
A 		4.1
(0.4)
A 		0.8
(-3)
A 		6
avr 2.5
(-3) 		9
(3) 		2.9
(-2.6) 		5.4
(-0.3) 		4.8
(-0.9) 		3.7
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26647
Sequence Type Exemplar sequence
Representative Public ID C60111 NCBI
Target Description C60111_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C60111 /DEF=C.elegans cDNA clone yk381a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C60111
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C60111 C60111_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C60111 /DEF=C.elegans cDNA clone yk381a11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063810 11/11 Negative Strand Matching Probes A 
SNAP00000006966 9/11 Negative Strand Matching Probes None
GENEFINDER00000006974 9/11 Negative Strand Matching Probes None
F54B3.1 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10266052-10266859(-) 99.67 99.67
Sequence
Target Sequence 
>C. ELEGANS:173061_AT
ttcctccattctcgtcaatattatatcgttgtgctcacgtgtcaagtacagatatttaat
cgcnacaagattctttgacaaaataagatcgtattgataataatccaagagtcgttcaat
cagatgaaaaacgttcattgaggctccaaataagcattttctcttattagcttttgcttc
gagaaacgtggcaactgctcgaagatggtagtcaaagttgaaggtcatgaagcagacact
gtcctgtaatttcaattga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTCCATTCTCGTCAATATTATA 124 701 23 Antisense
GTCAATATTATATCGTTGTGCTCAC 539 463 36 Antisense
GTTGTGCTCACGTGTCAAGTACAGA 79 437 50 Antisense
ATAATCCAAGAGTCGTTCAATCAGA 627 25 122 Antisense
GAGGCTCCAAATAAGCATTTTCTCT 650 405 162 Antisense
ATTTTCTCTTATTAGCTTTTGCTTC 261 15 178 Antisense
TAGCTTTTGCTTCGAGAAACGTGGC 364 643 190 Antisense
AACGTGGCAACTGCTCGAAGATGGT 66 145 207 Antisense
GCAACTGCTCGAAGATGGTAGTCAA 68 321 213 Antisense
GGTCATGAAGCAGACACTGTCCTGT 430 503 245 Antisense
GACACTGTCCTGTAATTTCAATTGA 367 367 257 Antisense
Sequence Source Affymetrix Proprietary Database