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[173059_at]

Description C57176_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57176 /DEF=C.elegans cDNA clone yk300a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 69      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 58      6grp_total > 79      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2538
1 2 3 4 range
A 3115.5
(3)
P 		1361.4
(-1.7)
P 		1384
(-1.6)
P 		878.9
(-3)
P 		2237
B 3417.3
(3)
P 		1705.2
(-2.2)
P 		1433.8
(-3)
P 		1916.6
(-1.5)
P 		1984
C 2858.3
(3)
P 		1433.8
(-3)
P 		1487.2
(-2.8)
P 		1537.9
(-2.6)
P 		1425
avr 3130.4
(3) 		1500.1
(-2.8) 		1435
(-3) 		1444.5
(-3) 		1695

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3348
1 2 3 4 5 6 range
A 2533.9
(-0.5)
P 		2785.8
(-0.1)
P 		1156.5
(-3)
P 		2104.7
(-1.3)
P 		3541.8
(1.3)
P 		4504.9
(3)
P 		3348
B 2499.6
(0.7)
P 		2619.3
(1.1)
P 		1259
(-3)
P 		2744.7
(1.4)
P 		2693.4
(1.3)
P 		3270.3
(3)
P 		2011
C 2952.3
(1.5)
P 		2207.8
(-2.1)
P 		2010.7
(-3)
P 		2468.1
(-0.8)
P 		3272.7
(3)
P 		3073
(2.1)
P 		1262
avr 2661.9
(0.3) 		2537.6
(-0) 		1475.4
(-3) 		2439.2
(-0.3) 		3169.3
(1.7) 		3616.1
(3) 		2141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1006
1 2 3 4 range
A 1134.4
(3)
P 		295.5
(-2)
P 		361.8
(-1.6)
P 		128.7
(-3)
P 		1006
B 1089.7
(3)
P 		421.2
(-2.3)
P 		332.2
(-3)
P 		408.4
(-2.4)
P 		758
C 946.2
(3)
P 		412.2
(-1.7)
P 		518.4
(-0.7)
P 		259.3
(-3)
P 		687
avr 1056.8
(3) 		376.3
(-2.2) 		404.1
(-1.9) 		265.5
(-3) 		791

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 968
1 2 3 4 5 6 range
A 467.1
(-1.5)
P 		990.8
(2.2)
P 		251.9
(-3)
P 		533.8
(-1)
P 		1068.8
(2.8)
P 		1096.8
(3)
P 		845
B 869.7
(0.7)
P 		871.8
(0.7)
P 		305.7
(-3)
P 		727
(-0.2)
P 		1094.3
(2.2)
P 		1219.5
(3)
P 		914
C 1094.3
(3)
P 		673.7
(-1.2)
P 		511.8
(-2.8)
P 		496.3
(-3)
P 		1059
(2.6)
P 		1028.7
(2.3)
P 		598
avr 810.4
(0.6) 		845.4
(0.9) 		356.5
(-3) 		585.7
(-1.2) 		1074
(2.7) 		1115
(3) 		759
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26577
Sequence Type Exemplar sequence
Representative Public ID C57176 NCBI
Target Description C57176_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57176 /DEF=C.elegans cDNA clone yk300a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076447 NCBI Caenorhabditis elegans Lin-5 (Five) Interacting protein family member (lfi-1) (lfi-1) mRNA, complete cds. 11/11 None
ZC8.4a ENSEMBL cdna:known chromosome:CEL140:X:4983551:4993192:1 gene:ZC8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180771 4 1 NM_001029810 191675_s_at (11)
NM_076446 191675_s_at (11)
NM_076447 173059_at (11), 191675_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4992865-4993139(+) 91.33 91.33
Public Domain and Genome References
Ensembl ZC8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69078 Lin-5 (five) interacting protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_508848.2| Lin-5 (Five) Interacting protein family member (lfi-1) [Caenorhabditis elegans] 0.0
blast NP_508847 Lin-5 (Five) Interacting protein family member (lfi-1) [Caenorhabditis elegans] 0.0
blast AAQ91890 Lin-5 (five) interacting protein protein 1, isoform d [Caenorhabditis elegans] ref|NP_001024981.1| Lin-5 (Five) Interacting protein family member (lfi-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.0890000015497208
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 2.9E-6
Sequence
Target Sequence 
>C. ELEGANS:173059_AT
cataaccccattgctttttccaaatgctttttcttttatcgcttataattccgtttcctt
ctgtcctcgtttcaattcaattatttgaatattcctatattctcagtcccttaaaaaaag
tccaataataantacaccgccctntccagttttccccgattttcatgtgcaccagacgcc
ctttcttccattacttttctcaactttctatcgttccgac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATAACCCCATTGCTTTTTCCAAAT 317 213 61 Antisense
ATTGCTTTTTCCAAATGCTTTTTCT 644 5 70 Antisense
AAATGCTTTTTCTTTTATCGCTTAT 332 119 82 Antisense
ATCGCTTATAATTCCGTTTCCTTCT 373 37 98 Antisense
CTTCTGTCCTCGTTTCAATTCAATT 40 221 118 Antisense
TGTCCTCGTTTCAATTCAATTATTT 703 553 122 Antisense
AATATTCCTATATTCTCAGTCCCTT 618 173 148 Antisense
TCCTATATTCTCAGTCCCTTAAAAA 426 585 153 Antisense
CCGATTTTCATGTGCACCAGACGCC 54 265 216 Antisense
TTCCATTACTTTTCTCAACTTTCTA 667 695 246 Antisense
TTTCTCAACTTTCTATCGTTCCGAC 29 671 256 Antisense
Sequence Source Affymetrix Proprietary Database