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[173057_at]

Description CEC0703_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C11070 /DEF=C.elegans cDNA clone yk163d5 : 3prime end, single read.
Cluster 6grp_total > 48      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 64.1
(-1.7)
P 		90.7
(3)
P 		56.7
(-3)
A 		62.5
(-2)
A 		34
B 79.1
(1.1)
A 		87.6
(3)
A 		60.9
(-3)
A 		66
(-1.9)
P 		27
C 71.9
(-2.7)
P 		84.9
(-0.8)
A 		69.7
(-3)
M 		111.5
(3)
A 		42
avr 71.7
(-0.8) 		87.7
(3) 		62.4
(-3) 		80
(1.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 90.7
(3)
A 		53.2
(-3)
A 		70.5
(-0.2)
A 		68.2
(-0.6)
A 		66.4
(-0.9)
P 		56.3
(-2.5)
A 		38
B 113.5
(2.3)
P 		84.7
(-0.7)
A 		61.5
(-3)
A 		102.9
(1.2)
P 		63.8
(-2.8)
M 		120.8
(3)
M 		59
C 40.9
(-1.1)
A 		78.8
(3)
P 		22.8
(-3)
A 		79.1
(3)
A 		55.2
(0.5)
P 		58.6
(0.8)
A 		56
avr 81.7
(2.7) 		72.2
(0.9) 		51.6
(-3) 		83.4
(3) 		61.8
(-1.1) 		78.6
(2.1) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 23.3
(3)
P 		19.7
(1.5)
P 		14.8
(-0.6)
A 		9.2
(-3)
A 		14
B 25.2
(3)
A 		21.6
(1.1)
A 		14.1
(-3)
A 		14.1
(-3)
P 		11
C 23.8
(2.4)
P 		24.4
(3)
A 		24.3
(2.9)
M 		18.8
(-3)
A 		6
avr 24.1
(3) 		21.9
(1.7) 		17.7
(-0.8) 		14
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 16.7
(-0.1)
A 		18.9
(2)
A 		15.3
(-1.5)
A 		17.3
(0.4)
A 		20
(3)
P 		13.7
(-3)
A 		6
B 39.5
(1.9)
P 		28.2
(-0.4)
A 		14.9
(-3)
A 		27.3
(-0.5)
P 		25.9
(-0.8)
M 		45.1
(3)
M 		30
C 15.1
(0.1)
A 		24
(3)
P 		5.8
(-3)
A 		15.9
(0.3)
A 		17.9
(1)
P 		19.6
(1.5)
A 		18
avr 23.8
(2) 		23.7
(2) 		12
(-3) 		20.2
(0.5) 		21.3
(1) 		26.1
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27084
Sequence Type Exemplar sequence
Representative Public ID CEC0703 NCBI
Target Description CEC0703_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C11070 /DEF=C.elegans cDNA clone yk163d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC0703
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC0703 CEC0703_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C11070 /DEF=C.elegans cDNA clone yk163d5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2063520-2063925(+) 98.0 98.0
Sequence
Target Sequence 
>C. ELEGANS:173057_AT
ttttcgggttcattctaacagaaatgctgagcattttctcggcggtttcattgtaatcct
ccagtacgttgtacatttttcccccccccgcaagtaaaagtgccttctgatttgtgtcat
acncgcgggaagttgagattatggttggaaggatttncctggataaactccccgcctttt
tgaataaccacccccgcctcctcgtctttcgatgatgttggataa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCGGGTTCATTCTAACAGAAAT 154 677 54 Antisense
AATGCTGAGCATTTTCTCGGCGGTT 336 165 76 Antisense
AGCATTTTCTCGGCGGTTTCATTGT 648 77 83 Antisense
TCTCGGCGGTTTCATTGTAATCCTC 642 609 90 Antisense
GTTTCATTGTAATCCTCCAGTACGT 47 447 98 Antisense
AATCCTCCAGTACGTTGTACATTTT 23 169 108 Antisense
CCCCCGCAAGTAAAAGTGCCTTCTG 87 259 138 Antisense
AAGTGCCTTCTGATTTGTGTCATAC 320 159 151 Antisense
GCGGGAAGTTGAGATTATGGTTGGA 462 291 178 Antisense
CCTCCTCGTCTTTCGATGATGTTGG 513 267 250 Antisense
CTCGTCTTTCGATGATGTTGGATAA 634 231 254 Antisense
Sequence Source Affymetrix Proprietary Database