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[173056_at]

Description C52736_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52736 /DEF=C.elegans cDNA clone yk272c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 24      6grp_total > 34      4grp_total > 59      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5695
1 2 3 4 range
A 2911
(0.7)
P 		3855.5
(2.2)
P 		4409.8
(3)
P 		433.7
(-3)
P 		3976
B 2357.9
(-1)
P 		6052.7
(3)
P 		4557
(1.4)
P 		502.9
(-3)
P 		5550
C 3548
(0.3)
P 		6129
(3)
P 		4675.6
(1.5)
P 		474.3
(-3)
P 		5655
avr 2939
(0) 		5345.7
(3) 		4547.5
(2) 		470.3
(-3) 		4875

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2773
1 2 3 4 5 6 range
A 2820.2
(-2)
P 		4431.8
(3)
P 		3345.4
(-0.4)
P 		2500.9
(-3)
P 		3029.4
(-1.4)
P 		2648.6
(-2.5)
P 		1931
B 4251.9
(3)
P 		3242.1
(-0.3)
P 		3336.8
(-0)
P 		2773.2
(-1.9)
P 		2440.8
(-3)
P 		2436
(-3)
P 		1816
C 3579.7
(-0.1)
P 		3541.1
(-0.2)
P 		5013
(3)
P 		2408.8
(-2.6)
P 		2808.2
(-1.8)
P 		2239.9
(-3)
P 		2773
avr 3550.6
(1.6) 		3738.3
(2.3) 		3898.4
(3) 		2561
(-2.5) 		2759.5
(-1.7) 		2441.5
(-3) 		1457
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1699
1 2 3 4 range
A 1059.9
(2.5)
P 		836.9
(1.3)
P 		1152.8
(3)
P 		63.5
(-3)
P 		1089
B 751.9
(-0.2)
P 		1494.9
(3)
P 		1056
(1.1)
P 		107.2
(-3)
P 		1388
C 1174.5
(0.9)
P 		1762.1
(3)
P 		1629.6
(2.5)
P 		80
(-3)
P 		1682
avr 995.4
(1.3) 		1364.6
(3) 		1279.5
(2.6) 		83.6
(-3) 		1281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1092
1 2 3 4 5 6 range
A 519.9
(-3)
P 		1576.2
(3)
P 		728.6
(-1.8)
P 		634.3
(-2.4)
P 		914.1
(-0.8)
P 		644.8
(-2.3)
P 		1056
B 1479.5
(3)
P 		1079.2
(-0.2)
P 		810.3
(-2.4)
P 		734.5
(-3)
P 		991.7
(-0.9)
P 		908.4
(-1.6)
P 		745
C 1326.8
(3)
P 		1080.5
(1.2)
P 		1275.9
(2.6)
P 		484.4
(-3)
P 		908.7
(0)
P 		749.8
(-1.1)
P 		842
avr 1108.7
(1.7) 		1245.3
(3) 		938.3
(0.1) 		617.7
(-3) 		938.2
(0.1) 		767.7
(-1.6) 		628
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26469
Sequence Type Exemplar sequence
Representative Public ID C52736 NCBI
Target Description C52736_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C52736 /DEF=C.elegans cDNA clone yk272c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078453(11), NM_171823(11), NM_078454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078453 NCBI Caenorhabditis elegans T23E7.2b (T23E7.2) mRNA, complete cds. 11/11 None
NM_171823 NCBI Caenorhabditis elegans T23E7.2e (T23E7.2) mRNA, complete cds. 11/11 None
NM_078454 NCBI Caenorhabditis elegans T23E7.2d (T23E7.2) mRNA, complete cds. 11/11 None
T23E7.2b ENSEMBL cdna:known chromosome:CEL140:X:17670938:17680690:1 gene:T23E7.2 11/11 A 
T23E7.2e ENSEMBL cdna:known chromosome:CEL140:X:17670951:17680686:1 gene:T23E7.2 11/11 A 
T23E7.2d ENSEMBL cdna:known chromosome:CEL140:X:17679404:17680685:1 gene:T23E7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181789 5 3 NM_078451 176362_s_at (11)
NM_078452 184881_s_at (11)
NM_078453 173056_at (11), 176362_s_at (11)
NM_078454 173056_at (11), 184427_s_at (11)
NM_171823 173056_at (11), 176362_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17680361-17680635(+) 89.33 89.33
Public Domain and Genome References
Ensembl T23E7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71257 Hypothetical protein T23E7.2a [Caenorhabditis elegans] ref|NP_510852.1| T23E7.2a [Caenorhabditis elegans] 1.0E-180
blast AAB71258 Hypothetical protein T23E7.2b [Caenorhabditis elegans] ref|NP_510854.1| T23E7.2b [Caenorhabditis elegans] 1.0E-180
blast AAM69068 Hypothetical protein T23E7.2e [Caenorhabditis elegans] ref|NP_741957.1| T23E7.2e [Caenorhabditis elegans] 1.0E-167
blast AAM69068 Hypothetical protein T23E7.2e [Caenorhabditis elegans] ref|NP_741957.1| T23E7.2e [Caenorhabditis elegans] 1.0E-144
blast AAB71257 Hypothetical protein T23E7.2a [Caenorhabditis elegans] ref|NP_510852.1| T23E7.2a [Caenorhabditis elegans] 1.0E-144
blast AAB71258 Hypothetical protein T23E7.2b [Caenorhabditis elegans] ref|NP_510854.1| T23E7.2b [Caenorhabditis elegans] 1.0E-144
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510855.1 1 15-37
T23E7.2d 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:173056_AT
aagagaccagagtccgtgatgccaagtcattgaaacctatccttccatttactaacaacg
gaacggaattttgganttacctttaaatagttatgtagatttttgtcgtcattttttccg
actcttttttttcaaattttcctacgtatctttctttctttccagcccagaccctatact
gccttttgtaatatgttttgtcaaatacccctgtatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGACCAGAGTCCGTGATGCCAA 235 155 59 Antisense
GAGTCCGTGATGCCAAGTCATTGAA 339 399 68 Antisense
AAGTCATTGAAACCTATCCTTCCAT 426 155 82 Antisense
TGAAACCTATCCTTCCATTTACTAA 461 571 89 Antisense
CCTATCCTTCCATTTACTAACAACG 680 267 94 Antisense
TAGATTTTTGTCGTCATTTTTTCCG 614 653 154 Antisense
TGTCGTCATTTTTTCCGACTCTTTT 46 559 162 Antisense
TCAAATTTTCCTACGTATCTTTCTT 296 629 190 Antisense
CCAGACCCTATACTGCCTTTTGTAA 82 273 225 Antisense
ACTGCCTTTTGTAATATGTTTTGTC 222 99 236 Antisense
ATGTTTTGTCAAATACCCCTGTATT 421 47 251 Antisense
Sequence Source Affymetrix Proprietary Database