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[173054_at]

Description C39116_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C39116 /DEF=C.elegans cDNA clone yk505h12 : 3prime end, single read.
Cluster 6grp_total > 68      4grp_total > 22      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 84.4
(1.5)
P 		41.4
(-1)
A 		6.7
(-3)
A 		110.1
(3)
P 		103
B 87
(3)
P 		21.2
(-3)
A 		35.2
(-1.7)
A 		33.5
(-1.9)
A 		66
C 54.4
(-0.1)
P 		26
(-3)
A 		26.4
(-3)
A 		84.5
(3)
P 		59
avr 75.3
(2.9) 		29.5
(-2.2) 		22.8
(-3) 		76
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 65.9
(3)
A 		25.6
(-3)
A 		40.2
(-0.8)
A 		52.3
(1)
A 		46
(0)
M 		59.5
(2)
A 		40
B 33.7
(-2.7)
P 		41.1
(-2)
P 		40.4
(-2.1)
A 		30.3
(-3)
A 		61.8
(-0.2)
P 		97.3
(3)
P 		67
C 46.3
(-0)
A 		53.4
(0.5)
A 		36.8
(-0.7)
A 		42.8
(-0.3)
A 		7.9
(-3)
A 		84.9
(3)
P 		77
avr 48.6
(-1.6) 		40
(-2.8) 		39.1
(-2.9) 		41.8
(-2.5) 		38.6
(-3) 		80.6
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 30.7
(3)
P 		9
(-1.5)
A 		1.7
(-3)
A 		16.1
(-0)
P 		29
B 27.8
(3)
P 		5.2
(-3)
A 		8.2
(-2.2)
A 		7.1
(-2.5)
A 		23
C 18
(3)
P 		7.5
(-3)
A 		9.2
(-2)
A 		14.2
(0.8)
P 		11
avr 25.5
(3) 		7.2
(-2.7) 		6.4
(-3) 		12.5
(-1.1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 12.2
(0.6)
A 		9.1
(-2.6)
A 		8.7
(-3)
A 		13.3
(1.8)
A 		13.9
(2.4)
M 		14.5
(3)
A 		6
B 11.7
(-2.2)
P 		13.7
(-1.8)
P 		9.8
(-2.6)
A 		8
(-3)
A 		25.1
(0.6)
P 		36.3
(3)
P 		28
C 17.2
(0.4)
A 		16.3
(0.2)
A 		9.4
(-1.4)
A 		8.6
(-1.6)
A 		2.5
(-3)
A 		28.4
(3)
P 		26
avr 13.7
(-1.5) 		13
(-1.7) 		9.3
(-3) 		10
(-2.8) 		13.8
(-1.4) 		26.4
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26430
Sequence Type Exemplar sequence
Representative Public ID C39116 NCBI
Target Description C39116_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C39116 /DEF=C.elegans cDNA clone yk505h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171266(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171266 NCBI Caenorhabditis elegans C09E9.1 (C09E9.1) mRNA, complete cds. 10/11 None
C09E9.1 ENSEMBL cdna:known chromosome:CEL140:IV:1275865:1277083:1 gene:C09E9.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003209 2/11 Cross Hyb Matching Probes None
GENEFINDER00000003211 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1276272-1276984(+) 99.33 99.33
Public Domain and Genome References
Gene Title
Ensembl C09E9.1
Entrez Gene 182452 Entrez gene
SwissProt Q93196 EMBL-EBI
WormBase CE08036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02258 Hypothetical protein C09E9.1 [Caenorhabditis elegans] ref|NP_741315.1| C09E9.1 [Caenorhabditis elegans] sp|Q93196|YI31_CAEEL Hypothetical protein C09E9.1 in chromosome I 1.0E-66
blast CAE68270 Hypothetical protein CBG13948 [Caenorhabditis briggsae] 6.0E-54
blast XP_873751 PREDICTED: similar to Tumor suppressor candidate 2 (PDGFA-associated protein 2) (Fus-1 protein) (Fusion 1 protein) [Bos taurus] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:173054_AT
gaatattttctgttcacgaggcgaaaagttcacaatatatcgacgaggatggtgacgtgg
caaacgagttttaccaagaaacgatgagcgacggcgagaaacgacgattatgccgnttaa
tgagaatttgaggccaaaaggcaaggaacgatacgcaattccacgantgaagcangacat
tccggtggtcatttgggaagttcagcagcctcaagaaacataatcttgaataaatttacc
gattttcactacaattttctccattttct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATTTTCTGTTCACGAGGCGAA 300 325 14 Antisense
GAAAAGTTCACAATATATCGACGAG 581 353 36 Antisense
TATCGACGAGGATGGTGACGTGGCA 290 597 51 Antisense
GTGACGTGGCAAACGAGTTTTACCA 84 483 65 Antisense
ACCAAGAAACGATGAGCGACGGCGA 516 1 86 Antisense
GAGCGACGGCGAGAAACGACGATTA 198 387 99 Antisense
AGGCAAGGAACGATACGCAATTCCA 96 55 152 Antisense
GACATTCCGGTGGTCATTTGGGAAG 644 369 189 Antisense
GGGAAGTTCAGCAGCCTCAAGAAAC 135 493 208 Antisense
TACCGATTTTCACTACAATTTTCTC 455 649 250 Antisense
TTCACTACAATTTTCTCCATTTTCT 291 687 258 Antisense
Sequence Source Affymetrix Proprietary Database