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[173051_s_at]

Description C57430_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57430 /DEF=C.elegans cDNA clone yk303e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 24      6grp_total > 43      4grp_total > 59      6grp_high1_sub > 03      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10008
1 2 3 4 range
A 5721.9
(0.9)
P 		6632
(1.5)
P 		8723
(3)
P 		135.2
(-3)
P 		8588
B 5399.7
(0.2)
P 		7280.7
(1.3)
P 		10090.5
(3)
P 		83
(-3)
P 		10008
C 6072.5
(1.1)
P 		7131.9
(1.8)
P 		8825.1
(3)
P 		127
(-3)
P 		8698
avr 5731.4
(0.7) 		7014.9
(1.6) 		9212.9
(3) 		115.1
(-3) 		9098

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4186
1 2 3 4 5 6 range
A 2521.2
(-2.1)
P 		4768.2
(1.3)
P 		5900.9
(3)
P 		2887.7
(-1.5)
P 		2363.7
(-2.3)
P 		1915.9
(-3)
P 		3985
B 2806.3
(-1.7)
P 		4347.3
(0.5)
P 		6068.5
(3)
P 		2210.1
(-2.5)
P 		2571.3
(-2)
P 		1882.5
(-3)
P 		4186
C 3029.9
(-1.5)
P 		4015.6
(0.4)
P 		5359.6
(3)
P 		2480.1
(-2.6)
P 		2883.6
(-1.8)
P 		2258.3
(-3)
P 		3101
avr 2785.8
(-1.8) 		4377
(0.8) 		5776.3
(3) 		2526
(-2.2) 		2606.2
(-2.1) 		2018.9
(-3) 		3757
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3058
1 2 3 4 range
A 2083.3
(2.5)
P 		1439.6
(0.8)
P 		2280.4
(3)
P 		19.8
(-3)
P 		2261
B 1721.9
(1.4)
P 		1798.2
(1.6)
P 		2338.2
(3)
P 		17.7
(-3)
P 		2321
C 2010.2
(0.9)
P 		2050.5
(1)
P 		3075.8
(3)
P 		21.4
(-3)
P 		3054
avr 1938.5
(1.5) 		1762.8
(1.1) 		2564.8
(3) 		19.6
(-3) 		2545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1231
1 2 3 4 5 6 range
A 464.8
(-3)
P 		1695.8
(3)
P 		1285.1
(1)
P 		732.4
(-1.7)
P 		713.3
(-1.8)
P 		466.5
(-3)
P 		1231
B 976.5
(-0.4)
P 		1447
(2.8)
P 		1473.6
(3)
P 		585.4
(-3)
P 		1044.7
(0.1)
P 		702
(-2.2)
P 		888
C 1123
(1.3)
P 		1225.3
(2)
P 		1364.1
(3)
P 		498.8
(-3)
P 		933.1
(0)
P 		756
(-1.2)
P 		865
avr 854.8
(-1.2) 		1456
(3) 		1374.3
(2.4) 		605.5
(-3) 		897
(-0.9) 		641.5
(-2.7) 		851
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173051_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26584
Sequence Type Exemplar sequence
Representative Public ID C57430 NCBI
Target Description C57430_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C57430 /DEF=C.elegans cDNA clone yk303e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029423 NCBI Caenorhabditis elegans F22A3.6a (F22A3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000004717 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6532599:6536066:-1 11/11 None
F22A3.6a ENSEMBL cdna:known chromosome:CEL140:X:6533504:6536732:-1 gene:F22A3.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171169 1/11 Cross Hyb Matching Probes A 
SNAP00000019458 1/11 Cross Hyb Matching Probes None
SNAP00000040034 1/11 Cross Hyb Matching Probes None
SNAP00000004714 7/11 Cross Hyb Matching Probes None
C05D11.11b.1 1/11 Cross Hyb Matching Probes A 
C05D11.11b.2 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180928 2 1 NM_001029423 172400_x_at (11), 173051_s_at (11), 194255_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6533533-6535213(-) 81.67 81.67
Public Domain and Genome References
Ensembl F22A3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024594 F22A3.6a [Caenorhabditis elegans] gb|AAA83197.1| Hypothetical protein F22A3.6a [Caenorhabditis elegans] 4.0E-84
blast CAE65750 Hypothetical protein CBG10836 [Caenorhabditis briggsae] 2.0E-77
blast NP_001024594 F22A3.6a [Caenorhabditis elegans] gb|AAA83197.1| Hypothetical protein F22A3.6a [Caenorhabditis elegans] 2.0E-74
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 4.0E-72
blast CAE65750 Hypothetical protein CBG10836 [Caenorhabditis briggsae] 1.0E-67
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR008597 EMBL-EBI Destabilase 1.2E-71
Pfam IPR008597 EMBL-EBI Destabilase 2.6E-69
Sequence
Target Sequence 
>C. ELEGANS:173051_S_AT
gcggatactatcagatcaagattggatactatgaagactgcggacaaccaacaaagaagg
ctggagagactactgaagctgcctggaagagatgtgctgatgatcttaactgcgctacca
cttgcgtcgagaactactacaaccgctacaagtctccagtgcaatggacttggaatggga
gcttgccagatcatgtcccgtaaccacaacggaggaccacgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGATACTATCAGATCAAGATTGG 320 293 55 Antisense
GATACTATGAAGACTGCGGACAACC 89 421 79 Antisense
GAAGACTGCGGACAACCAACAAAGA 361 339 87 Antisense
TGGAGAGACTACTGAAGCTGCCTGG 391 549 116 Antisense
GACTACTGAAGCTGCCTGGAAGAGA 605 373 122 Antisense
GATGTGCTGATGATCTTAACTGCGC 301 409 145 Antisense
TGCTGATGATCTTAACTGCGCTACC 617 577 149 Antisense
CCACTTGCGTCGAGAACTACTACAA 614 273 172 Antisense
AATGGGAGCTTGCCAGATCATGTCC 534 163 228 Antisense
GATCATGTCCCGTAACCACAACGGA 501 419 243 Antisense
TAACCACAACGGAGGACCACGTGGA 342 145 255 Antisense
Sequence Source Affymetrix Proprietary Database