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[173049_at]

Description CEK010F9R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27199 /DEF=C.elegans cDNA clone yk10f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 03      6grp_total > 05      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4887
1 2 3 4 range
A 4212.2
(2.9)
P 		4283.7
(3)
P 		4096.1
(2.7)
P 		175.7
(-3)
P 		4108
B 3981.2
(1.9)
P 		4797.8
(3)
P 		3947.2
(1.9)
P 		158.3
(-3)
P 		4640
C 5045.3
(3)
P 		3416.5
(1)
P 		4019.4
(1.7)
P 		252
(-3)
P 		4793
avr 4412.9
(3) 		4166
(2.6) 		4020.9
(2.4) 		195.3
(-3) 		4218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3545
1 2 3 4 5 6 range
A 4132.1
(1.6)
P 		4676.4
(3)
P 		2307.2
(-3)
P 		2326.5
(-2.9)
P 		2989.8
(-1.2)
P 		2294.1
(-3)
P 		2382
B 4836.7
(3)
P 		3940.8
(1.3)
P 		2256
(-2)
P 		2809.5
(-0.9)
P 		2070.8
(-2.3)
P 		1734.1
(-3)
P 		3103
C 5006.8
(3)
P 		3114.2
(-0.2)
P 		3650.1
(0.7)
P 		2183.6
(-1.8)
P 		3478.1
(0.4)
P 		1462.3
(-3)
P 		3545
avr 4658.5
(3) 		3910.5
(1.4) 		2737.8
(-1.1) 		2439.9
(-1.7) 		2846.2
(-0.8) 		1830.2
(-3) 		2828
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1644
1 2 3 4 range
A 1533.7
(3)
P 		929.9
(0.6)
P 		1070.8
(1.2)
P 		25.7
(-3)
P 		1508
B 1269.6
(3)
P 		1184.9
(2.6)
P 		914.7
(1.3)
P 		33.7
(-3)
P 		1236
C 1670.1
(3)
P 		982.3
(0.5)
P 		1400.9
(2)
P 		42.5
(-3)
P 		1628
avr 1491.1
(3) 		1032.4
(1.1) 		1128.8
(1.5) 		34
(-3) 		1457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1417
1 2 3 4 5 6 range
A 761.7
(-1.7)
P 		1663.1
(3)
P 		502.5
(-3)
P 		590.1
(-2.5)
P 		902.2
(-0.9)
P 		558.5
(-2.7)
P 		1161
B 1682.9
(3)
P 		1311.7
(1)
P 		547.8
(-3)
P 		744.1
(-2)
P 		841.4
(-1.4)
P 		646.7
(-2.5)
P 		1135
C 1855.8
(3)
P 		950.2
(-0.8)
P 		929
(-0.9)
P 		439.1
(-3)
P 		1125.5
(-0.1)
P 		489.5
(-2.8)
P 		1417
avr 1433.5
(3) 		1308.3
(2.1) 		659.8
(-2.3) 		591.1
(-2.8) 		956.4
(-0.3) 		564.9
(-3) 		869
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27346
Sequence Type Exemplar sequence
Representative Public ID CEK010F9R NCBI
Target Description CEK010F9R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D27199 /DEF=C.elegans cDNA clone yk10f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072617, NM_171931
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171931 NCBI Caenorhabditis elegans PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) (ppn-1) mRNA, complete cds. None
NM_072617 NCBI Caenorhabditis elegans PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) (ppn-1) mRNA, complete cds. A 
C37C3.6c.2 ENSEMBL cdna:known chromosome:CEL140:V:7829824:7836263:1 gene:C37C3.6 None
C37C3.6c.1 ENSEMBL cdna:known chromosome:CEL140:V:7829882:7836263:1 gene:C37C3.6 None
C37C3.6a ENSEMBL cdna:known chromosome:CEL140:V:7829892:7836243:1 gene:C37C3.6 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7835887-7836190(+) 90.52 90.52
Public Domain and Genome References
Ensembl C37C3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29666 Hypothetical protein C37C3.6c [Caenorhabditis elegans] ref|NP_741569.1| PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) [Caenorhabditis elegans] 0.0
blast AAC25867 Hypothetical protein C37C3.6a [Caenorhabditis elegans] ref|NP_505018.1| PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) [Caenorhabditis elegans] 0.0
blast AAC25868 Hypothetical protein C37C3.6b [Caenorhabditis elegans] ref|NP_505017.1| PaPiliN (Drosophila ECM protein) homolog family member (ppn-1) [Caenorhabditis elegans] 0.0
blast CAE73170 Hypothetical protein CBG20566 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010294 EMBL-EBI ADAM-TS Spacer 1 9.6E-54
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.8E-5
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 5.4E-7
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.2E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.2E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.1E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.9E-30
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.1E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.9E-30
Sequence
Target Sequence 
>C. ELEGANS:173049_AT
gagtaagttctaagttaatagtgaaatatgctttgtttcccctttattctttgacaattt
tcaaatactttttgcataattaccttatttctattcccttctgtttcccattttcctcca
cccgctacaaattgtttcccgtactctctcgtttctcactttcccgtcngaagggatgng
ccaatgctgcctaaatgaactgcctaataatat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTAAGTTCTAAGTTAATAGTGAA 453 373 53 Antisense
AGTGAAATATGCTTTGTTTCCCCTT 42 61 72 Antisense
GAAATATGCTTTGTTTCCCCTTTAT 53 363 75 Antisense
TGTTTCCCCTTTATTCTTTGACAAT 490 559 86 Antisense
GACAATTTTCAAATACTTTTTGCAT 296 363 105 Antisense
AATACTTTTTGCATAATTACCTTAT 553 169 116 Antisense
CATAATTACCTTATTTCTATTCCCT 217 213 127 Antisense
GCTACAAATTGTTTCCCGTACTCTC 5 303 176 Antisense
GCCAATGCTGCCTAAATGAACTGCC 55 279 232 Antisense
TGCTGCCTAAATGAACTGCCTAATA 105 583 237 Antisense
GCCTAAATGAACTGCCTAATAATAT 709 275 241 Antisense
Sequence Source Affymetrix Proprietary Database