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[173048_at]

Description CEK011A9R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32333 /DEF=C.elegans cDNA clone yk11a9 : 3prime end, single read.
Cluster 6grp_total > 18      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 45.8
(-1.6)
A 		52.9
(-1.3)
A 		11.8
(-3)
A 		159.1
(3)
P 		147
B 78
(-0.2)
P 		48.1
(-3)
A 		63.8
(-1.5)
A 		111.1
(3)
P 		63
C 72.8
(0.1)
P 		13.1
(-3)
A 		36.1
(-1.8)
A 		127.3
(3)
P 		114
avr 65.5
(-1.2) 		38
(-2.9) 		37.2
(-3) 		132.5
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 78.3
(3)
A 		48.2
(0.5)
A 		4.8
(-3)
A 		44.1
(0.2)
M 		33.6
(-0.6)
A 		41.6
(0)
A 		74
B 60.6
(3)
P 		56.8
(2.2)
A 		41.1
(-1.1)
P 		45.7
(-0.1)
A 		38.1
(-1.7)
A 		32
(-3)
A 		29
C 62.7
(3)
P 		17.1
(-3)
A 		41.3
(0.2)
A 		55.5
(2.1)
A 		47.2
(1)
P 		48.5
(1.1)
A 		46
avr 67.2
(3) 		40.7
(-1.2) 		29.1
(-3) 		48.4
(0) 		39.6
(-1.3) 		40.7
(-1.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16.7
(1)
A 		11.5
(-0.5)
A 		3.1
(-3)
A 		23.3
(3)
P 		20
B 24.9
(3)
P 		11.9
(-3)
A 		14.8
(-1.7)
A 		23.7
(2.4)
P 		13
C 24.1
(3)
P 		3.8
(-3)
A 		12.6
(-0.4)
A 		21.5
(2.2)
P 		20
avr 21.9
(2.6) 		9.1
(-3) 		10.2
(-2.5) 		22.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14.4
(2)
A 		17.1
(3)
A 		1.1
(-3)
A 		11.2
(0.8)
M 		10.1
(0.4)
A 		10.1
(0.4)
A 		16
B 21.1
(3)
P 		18.9
(1.8)
A 		10
(-3)
P 		12.1
(-1.9)
A 		15.5
(-0)
A 		11.9
(-2)
A 		11
C 23.2
(3)
P 		5.2
(-3)
A 		10.5
(-1.2)
A 		11.2
(-1)
A 		15.3
(0.4)
P 		16.2
(0.7)
A 		18
avr 19.6
(3) 		13.7
(0.1) 		7.2
(-3) 		11.5
(-0.9) 		13.6
(0.1) 		12.7
(-0.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27348
Sequence Type Exemplar sequence
Representative Public ID CEK011A9R NCBI
Target Description CEK011A9R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32333 /DEF=C.elegans cDNA clone yk11a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077089
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077089 NCBI Caenorhabditis elegans R04E5.7 (R04E5.7) mRNA, complete cds. A 
SNAP00000036364 ENSEMBL cdna:SNAP chromosome:CEL140:X:8796268:8797199:-1 None
R04E5.7 ENSEMBL cdna:known chromosome:CEL140:X:8796482:8798149:-1 gene:R04E5.7 None
GENEFINDER00000036373 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8796268:8796872:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8796262-8796656(-) 95.33 95.33
Public Domain and Genome References
Gene Title
Ensembl R04E5.7
Entrez Gene 181126 Entrez gene
SwissProt Q9GYL5 EMBL-EBI
WormBase CE35748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00009 Hypothetical protein R04E5.7 [Caenorhabditis elegans] ref|NP_509490.2| R04E5.7 [Caenorhabditis elegans] 2.0E-53
blast AAG00009 Hypothetical protein R04E5.7 [Caenorhabditis elegans] ref|NP_509490.2| R04E5.7 [Caenorhabditis elegans] 9.0E-52
blast CAE69365 Hypothetical protein CBG15460 [Caenorhabditis briggsae] 3.0E-35
blast CAE69365 Hypothetical protein CBG15460 [Caenorhabditis briggsae] 7.0E-26
blast CAE69365 Hypothetical protein CBG15460 [Caenorhabditis briggsae] 2.0E-16
blast AAG00009 Hypothetical protein R04E5.7 [Caenorhabditis elegans] ref|NP_509490.2| R04E5.7 [Caenorhabditis elegans] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:173048_AT
gacccacaaacatgctcacaagttctcgctacccagaagttgcacaaaatgagggagata
ccttcaatgtacagcggccaactcgtagtttgtcgggtaagtaactcatataatgtttca
aatgcatgttttcatttaacacttgataacttttcagttaccgagctttctacaaaattc
gaagcaccgtccttgtctgcagaagttccagccaatttcatggcagaccagggtaaatca
caaccgcctccttcagcaaaagagactgcctcatgccgagtagccgattggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCACAAACATGCTCACAAGTTC 534 381 98 Antisense
AATGCATGTTTTCATTTAACACTTG 673 165 218 Antisense
TTTAACACTTGATAACTTTTCAGTT 402 671 232 Antisense
CTTTTCAGTTACCGAGCTTTCTACA 77 223 247 Antisense
ACCGAGCTTTCTACAAAATTCGAAG 554 87 257 Antisense
GTCCTTGTCTGCAGAAGTTCCAGCC 436 477 286 Antisense
GTTCCAGCCAATTTCATGGCAGACC 187 441 302 Antisense
GACCAGGGTAAATCACAACCGCCTC 350 381 323 Antisense
AACCGCCTCCTTCAGCAAAAGAGAC 618 145 339 Antisense
AGCAAAAGAGACTGCCTCATGCCGA 195 73 352 Antisense
GCCTCATGCCGAGTAGCCGATTGGC 146 283 365 Antisense
Sequence Source Affymetrix Proprietary Database