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[173046_at]

Description CEK001CZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D26755 /DEF=C.elegans cDNA clone yk1c12 : 3prime end, single read.
Cluster 6grp_total > 48      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.6
(-3)
A 		39.7
(2.6)
A 		17.3
(-0.7)
A 		42.5
(3)
A 		41
B 13.3
(-2.1)
A 		10.3
(-3)
A 		24.4
(1)
A 		31.2
(3)
A 		21
C 11.7
(-0.5)
A 		14.7
(1.6)
A 		8.1
(-3)
A 		16.7
(3)
A 		9
avr 8.9
(-3) 		21.6
(0.6) 		16.6
(-0.8) 		30.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 29.9
(3)
A 		13.4
(-0.8)
A 		3.7
(-3)
A 		5.1
(-2.7)
A 		3.7
(-3)
A 		8.2
(-2)
A 		26
B 2.8
(-3)
A 		4.7
(-2.5)
A 		3.6
(-2.8)
A 		3.8
(-2.7)
A 		3.8
(-2.7)
A 		23.9
(3)
A 		21
C 2
(-3)
A 		2.8
(-2.4)
A 		2.9
(-2.3)
A 		8.4
(1.7)
A 		10.2
(3)
A 		2.5
(-2.6)
A 		8
avr 11.6
(3) 		7
(-0.4) 		3.4
(-3) 		5.8
(-1.2) 		5.9
(-1.2) 		11.5
(2.9) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.6
(-3)
A 		8.6
(3)
A 		4.5
(-0.1)
A 		6.2
(1.2)
A 		8
B 4.2
(-0.6)
A 		2.5
(-3)
A 		5.7
(1.6)
A 		6.7
(3)
A 		4
C 3.9
(1.7)
A 		4.2
(3)
A 		2.8
(-3)
A 		2.8
(-3)
A 		1
avr 2.9
(-3) 		5.1
(2.7) 		4.3
(0.7) 		5.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.5
(3)
A 		4.8
(2.1)
A 		0.8
(-3)
A 		1.3
(-2.4)
A 		1.1
(-2.6)
A 		2
(-1.5)
A 		5
B 1
(-2.9)
A 		1.6
(-2.5)
A 		0.9
(-3)
A 		1
(-2.9)
A 		1.5
(-2.6)
A 		8.9
(3)
A 		8
C 0.7
(-3)
A 		0.9
(-2.5)
A 		0.7
(-3)
A 		1.7
(-0.7)
A 		3.3
(3)
A 		0.8
(-2.8)
A 		3
avr 2.4
(0.1) 		2.4
(0.1) 		0.8
(-3) 		1.3
(-2) 		2
(-0.7) 		3.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27313
Sequence Type Exemplar sequence
Representative Public ID CEK001CZR NCBI
Target Description CEK001CZR_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D26755 /DEF=C.elegans cDNA clone yk1c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059483
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T10E9.2 ENSEMBL cdna:known chromosome:CEL140:I:6550234:6553087:1 gene:T10E9.2 A 
NM_059483 NCBI Caenorhabditis elegans T10E9.2 (T10E9.2) mRNA, complete cds. A 
GENEFINDER00000043004 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6550302:6554629:1 None
SNAP00000042994 ENSEMBL cdna:SNAP chromosome:CEL140:I:6550302:6553011:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6552548-6553002(+) 82.57 82.57
Public Domain and Genome References
Gene Title
Ensembl T10E9.2
Entrez Gene 172365 Entrez gene
SwissProt O01605 EMBL-EBI
WormBase CE13545 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52470 Hypothetical protein T10E9.2 [Caenorhabditis elegans] ref|NP_491884.1| T10E9.2 [Caenorhabditis elegans] 0.0
blast CAE67228 Hypothetical protein CBG12667 [Caenorhabditis briggsae] 0.0
blast AAB52469 Hypothetical protein T10E9.1 [Caenorhabditis elegans] ref|NP_491885.1| T10E9.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173046_AT
aaagacaccgtggattgaatcatcgttctccttccttcgtcctccgtcggatgaacccaa
ctcttgaagccggatagattcgaccgggaatttgttattagaagctactaccacaagatg
agagcccgagnaagatcgaaaagtaccagaacttaaagtgaaagatttatcccaaatgag
gccagctgaagttcgtgaatgggttaaaagagaagctgaaaagcgaggagttgactggaa
agatcagtcatcatcatcagaaggagaagatatggaatcggaaactaccacggaacgaat
agcaggaaataattggaataatatgagattaaaagatatcaaagaacttgttcgcacagc
accccaaaggaagaagattgatatttcaaacgattccagtagtgattcagatgattgtta
gattacgtagtaatttattcgttgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACACCGTGGATTGAATCATCG 357 123 13 Antisense
GTGGATTGAATCATCGTTCTCCTTC 473 489 22 Antisense
GTCGGATGAACCCAACTCTTGAAGC 449 471 58 Antisense
TGAACCCAACTCTTGAAGCCGGATA 498 571 64 Antisense
ACCCAACTCTTGAAGCCGGATAGAT 278 89 67 Antisense
GAAGCCGGATAGATTCGACCGGGAA 123 327 78 Antisense
GATTCGACCGGGAATTTGTTATTAG 623 407 89 Antisense
ATTAGAAGCTACTACCACAAGATGA 180 13 109 Antisense
TACTACCACAAGATGAGAGCCCGAG 572 643 118 Antisense
TTCGCACAGCACCCCAAAGGAAGAA 704 695 363 Antisense
GATTACGTAGTAATTTATTCGTTGT 64 431 433 Antisense
Sequence Source Affymetrix Proprietary Database