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[173045_at]

Description CEC1263_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C11126 /DEF=C.elegans cDNA clone yk164d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 91      6grp_total > 94      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 254.1
(-3)
P 		260.8
(-2.7)
P 		407.2
(3)
P 		404.2
(2.9)
P 		153
B 209.4
(-3)
P 		350.7
(-0.3)
P 		395.8
(0.5)
P 		526.9
(3)
P 		318
C 278.2
(-3)
P 		365.6
(-0)
P 		454.4
(3)
P 		416.7
(1.7)
P 		176
avr 247.2
(-3) 		325.7
(-0.7) 		419.1
(2.1) 		449.3
(3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 242
(-0.1)
P 		180.7
(-2.2)
P 		156.4
(-3)
P 		269.1
(0.8)
P 		335.2
(3)
P 		228.3
(-0.6)
P 		179
B 175.4
(-2.1)
P 		193.8
(-1.5)
P 		147.4
(-3)
P 		242.5
(0.1)
P 		329.8
(3)
P 		241.5
(0.1)
P 		182
C 207.1
(-1.5)
P 		175.2
(-2.2)
P 		139.9
(-3)
P 		246.7
(-0.6)
P 		403.8
(3)
P 		272.2
(0)
P 		264
avr 208.2
(-1.3) 		183.2
(-2) 		147.9
(-3) 		252.8
(0) 		356.3
(3) 		247.3
(-0.1) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 92.5
(1.3)
P 		56.6
(-3)
P 		106.5
(3)
P 		59.2
(-2.7)
P 		50
B 66.8
(-3)
P 		86.6
(-0.4)
P 		91.7
(0.3)
P 		112.3
(3)
P 		46
C 92.1
(-1.5)
P 		105.1
(-0.6)
P 		158.4
(3)
P 		70.3
(-3)
P 		88
avr 83.8
(-2.5) 		82.8
(-2.7) 		118.9
(3) 		80.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 44.6
(-2.1)
P 		64.3
(-0.3)
P 		34.1
(-3)
P 		68.2
(0.1)
P 		101.1
(3)
P 		55.6
(-1.1)
P 		67
B 61
(-1.5)
P 		64.5
(-1.2)
P 		35.8
(-3)
P 		64.2
(-1.3)
P 		134
(3)
P 		90.1
(0.3)
P 		98
C 76.8
(-0.4)
P 		53.5
(-1.9)
P 		35.6
(-3)
P 		49.6
(-2.1)
P 		130.7
(3)
P 		91.1
(0.5)
P 		95
avr 60.8
(-1.2) 		60.8
(-1.2) 		35.2
(-3) 		60.7
(-1.2) 		121.9
(3) 		78.9
(0) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27094
Sequence Type Exemplar sequence
Representative Public ID CEC1263 NCBI
Target Description CEC1263_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C11126 /DEF=C.elegans cDNA clone yk164d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182076(10), NM_058534(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182076 NCBI Caenorhabditis elegans Y37E3.16b (Y37E3.16) mRNA, complete cds. 10/11 None
NM_058534 NCBI Caenorhabditis elegans Y37E3.16a (Y37E3.16) mRNA, complete cds. 9/11 None
GENEFINDER00000001217 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2112562:2118520:-1 9/11 None
Y37E3.16b.1 ENSEMBL cdna:known chromosome:CEL140:I:2113650:2118532:-1 gene:Y37E3.16 10/11 None
Y37E3.16b.2 ENSEMBL cdna:known chromosome:CEL140:I:2113657:2118552:-1 gene:Y37E3.16 10/11 None
Y37E3.16a ENSEMBL cdna:known chromosome:CEL140:I:2113786:2118520:-1 gene:Y37E3.16 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2113713-2115335(-) 99.67 99.67
Public Domain and Genome References
Gene Title
Ensembl Y37E3.16
Entrez Gene 171773 Entrez gene
SwissProt Q8IA95 EMBL-EBI
WormBase CE36732 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15067_AT iron transporter-related at
ATH1-121501:267029_AT iron transporter-related at
CANINE:1602005_AT similar to Solute carrier family 40, member 1 (Ferroportin-1) (Iron-regulated transporter 1) cfa
CANINE:1584484_AT similar to Solute carrier family 40, member 1 (Ferroportin-1) (Iron-regulated transporter 1) cfa
CANINE_2:CFA.5491.1.A1_AT similar to Solute carrier family 40, member 1 (Ferroportin-1) (Iron-regulated transporter 1) cfa
CANINE_2:CFAAFFX.14748.1.S1_AT similar to Solute carrier family 40, member 1 (Ferroportin-1) (Iron-regulated transporter 1) cfa
CHICKEN:GGA.17326.1.S1_S_AT solute carrier family 40 (iron-regulated transporter), member 1 gga
CHICKEN:GGAAFFX.25485.1.S1_AT solute carrier family 40 (iron-regulated transporter), member 1 gga
CHICKEN:GGAAFFX.25485.2.S1_S_AT solute carrier family 40 (iron-regulated transporter), member 1 gga
CHICKEN:GGA.2469.1.A1_AT Solute carrier family 40 (iron-regulated transporter), member 1 gga
HG-U133B:223044_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U133_PLUS_2:223044_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HU35KSUBA:D82422_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HU35KSUBA:RC_AA490670_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HU35KSUBB:RC_AA011593_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HU35KSUBB:RC_T52564_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HU35KSUBD:RC_W31478_S_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
U133_X3P:G12053382_3P_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U95B:45826_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U95B:47365_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U95C:53529_AT solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U133_PLUS_2:233123_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U133B:233123_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
U133_X3P:HS.238381.0.S1_3P_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
U133_X3P:233123_3P_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U133_PLUS_2:239723_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U133B:239723_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
HG-U95B:46561_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
HU35KSUBD:RC_H66710_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
U133_X3P:HS.133525.0.A1_3P_AT Solute carrier family 40 (iron-regulated transporter), member 1 hs
MG-U74BV2:109069_AT solute carrier family 40 (iron-regulated transporter), member 1 mm
MOE430A:1417061_AT solute carrier family 40 (iron-regulated transporter), member 1 mm
MOUSE430A_2:1417061_AT solute carrier family 40 (iron-regulated transporter), member 1 mm
MOUSE430_2:1417061_AT solute carrier family 40 (iron-regulated transporter), member 1 mm
MOE430A:1448566_AT solute carrier family 40 (iron-regulated transporter), member 1 mm
MOUSE430A_2:1448566_AT solute carrier family 40 (iron-regulated transporter), member 1 mm
MOUSE430_2:1448566_AT solute carrier family 40 (iron-regulated transporter), member 1 mm
MG-U74CV2:128795_AT Solute carrier family 40 (iron-regulated transporter), member 1, mRNA (cDNA clone MGC:6489 IMAGE:2647365) mm
MOE430B:1447227_AT Solute carrier family 40 (iron-regulated transporter), member 1, mRNA (cDNA clone MGC:6489 IMAGE:2647365) mm
MOUSE430_2:1447227_AT Solute carrier family 40 (iron-regulated transporter), member 1, mRNA (cDNA clone MGC:6489 IMAGE:2647365) mm
MU19KSUBB:TC31138_AT Solute carrier family 40 (iron-regulated transporter), member 1, mRNA (cDNA clone MGC:6489 IMAGE:2647365) mm
MU19KSUBC:TC35590_AT Solute carrier family 40 (iron-regulated transporter), member 1, mRNA (cDNA clone MGC:6489 IMAGE:2647365) mm
Protein Similarities
Method ID Description E-Value
blast NP_871876 Y37E3.16b [Caenorhabditis elegans] gb|AAO12401.2| Hypothetical protein Y37E3.16 [Caenorhabditis elegans] 0.0
blast CAE74367 Hypothetical protein CBG22091 [Caenorhabditis briggsae] 0.0
blast NP_490935 Y37E3.16a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009716 EMBL-EBI Ferroportin1 3.8E-12
Pfam IPR009716 EMBL-EBI Ferroportin1 3.8E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_871876.2 10 13-32,42-64,77-96,173-192,242-264,274-296,303-325,369-388,409-431,436-458
NP_490935.1 10 13-32,42-64,77-96,101-120,173-195,205-227,234-256,300-319,340-362,367-389
Y37E3.16b.1 10 13-32,42-64,77-96,173-192,242-264,274-296,303-325,369-388,409-431,436-458
Y37E3.16b.2 10 13-32,42-64,77-96,173-192,242-264,274-296,303-325,369-388,409-431,436-458
Y37E3.16a 10 13-32,42-64,77-96,101-120,173-195,205-227,234-256,300-319,340-362,367-389
GENEFINDER00000001217 10 13-32,42-64,77-96,173-192,242-264,274-296,303-325,369-388,409-431,436-458
Sequence
Target Sequence 
>C. ELEGANS:173045_AT
tcttcgtgttcaccggtttcatgttcaacgtgttctatcatgcacagtgcggattctcat
gtgtcaataagaatatgcacctcggaagacagccagtgtgtgagatggctacattgtcaa
gtccggagaaacaaagccttatgggtgatgagaaggagaanccacaagtgttggattcgc
caacttttgaataattacaaaatgatcttatctgtatattctgatttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTGTTCACCGGTTTCATGTT 369 617 47 Antisense
ACCGGTTTCATGTTCAACGTGTTCT 188 89 58 Antisense
ACGTGTTCTATCATGCACAGTGCGG 630 93 74 Antisense
CAGTGCGGATTCTCATGTGTCAATA 706 207 91 Antisense
GAATATGCACCTCGGAAGACAGCCA 313 323 117 Antisense
ACCTCGGAAGACAGCCAGTGTGTGA 135 85 125 Antisense
CAGTGTGTGAGATGGCTACATTGTC 148 209 140 Antisense
GATGGCTACATTGTCAAGTCCGGAG 583 399 150 Antisense
GTCCGGAGAAACAAAGCCTTATGGG 87 471 167 Antisense
CAAGTGTTGGATTCGCCAACTTTTG 464 183 211 Antisense
GATCTTATCTGTATATTCTGATTTC 690 419 250 Antisense
Sequence Source Affymetrix Proprietary Database