[Home] | [Total List]

[173043_at]

Description CEK071D2R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D65945 /DEF=C.elegans cDNA clone yk71d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 56      6grp_total > 94      4grp_total > 09      6grp_highest_sub > 04_05      6grp_cgc > 88      6grp_high1_sub > 04_05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1711
1 2 3 4 range
A 1719.4
(-2.8)
P 		1693.1
(-3)
P 		1750.8
(-2.7)
P 		2693.1
(3)
P 		1000
B 1951
(-2.9)
P 		1940.4
(-3)
P 		2022.8
(-2.6)
P 		3044.8
(3)
P 		1104
C 1739.1
(-3)
P 		2185.9
(-1.4)
P 		2166.7
(-1.5)
P 		3404.4
(3)
P 		1665
avr 1803.2
(-3) 		1939.8
(-2.3) 		1980.1
(-2.1) 		3047.4
(3) 		1244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1064
1 2 3 4 5 6 range
A 2286.4
(1.8)
P 		1435.8
(-3)
P 		2006.3
(0.2)
P 		2112.2
(0.8)
P 		2500
(3)
P 		1689.2
(-1.6)
P 		1064
B 1957.1
(0.8)
P 		1449.8
(-3)
P 		2234.1
(2.9)
P 		1903.3
(0.4)
P 		2240.8
(3)
P 		1898.6
(0.4)
P 		791
C 2041.4
(1.1)
P 		1587.9
(-3)
P 		1645.9
(-2.5)
P 		2247
(2.9)
P 		2223.7
(2.7)
P 		2259.2
(3)
P 		671
avr 2095
(1.4) 		1491.2
(-3) 		1962.1
(0.4) 		2087.5
(1.3) 		2321.5
(3) 		1949
(0.3) 		830
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 626
(3)
P 		367.5
(-3)
P 		457.7
(-0.9)
P 		394.2
(-2.4)
P 		259
B 622.2
(2.1)
P 		479.2
(-2.7)
P 		468.7
(-3)
P 		648.8
(3)
P 		180
C 575.7
(-2.9)
P 		628.5
(-1.2)
P 		755.2
(3)
P 		574
(-3)
P 		181
avr 608
(3) 		491.7
(-3) 		560.5
(0.5) 		539
(-0.6) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 499
1 2 3 4 5 6 range
A 421.5
(-2.8)
P 		510.7
(-1.3)
P 		436.9
(-2.6)
P 		535.7
(-0.8)
P 		754.4
(3)
P 		411.3
(-3)
P 		343
B 681
(-0.2)
P 		482.6
(-3)
P 		542.5
(-2.2)
P 		504.1
(-2.7)
P 		910.4
(3)
P 		708
(0.2)
P 		428
C 756.7
(3)
P 		484.5
(-1.8)
P 		418.9
(-3)
P 		451.9
(-2.4)
P 		719.6
(2.3)
P 		756.3
(3)
P 		338
avr 619.7
(-0.2) 		492.6
(-2.5) 		466.1
(-3) 		497.2
(-2.4) 		794.8
(3) 		625.2
(-0.1) 		329
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27429
Sequence Type Exemplar sequence
Representative Public ID CEK071D2R NCBI
Target Description CEK071D2R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D65945 /DEF=C.elegans cDNA clone yk71d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068840
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024164 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7633414:7634415:1 None
GENEFINDER00000024182 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7633414:7634415:1 None
F45E4.2.3 ENSEMBL cdna:known chromosome:CEL140:IV:7633337:7634570:1 gene:F45E4.2 None
F45E4.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:7633337:7634570:1 gene:F45E4.2 None
NM_068840 NCBI Caenorhabditis elegans Pur alpha Like Protein family member (plp-1) (plp-1) mRNA, complete cds. A 
F45E4.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:7633344:7634620:1 gene:F45E4.2 None
GENEFINDER00000040739 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14980870:14982720:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7634248-7634633(+) 90.91 90.91
Public Domain and Genome References
Gene Title
Gene Symbol plp-1
Ensembl F45E4.2
Entrez Gene 177540 Entrez gene
SwissProt Q94230 EMBL-EBI
WormBase CE10494 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15643_S_AT PUR alpha-1 protein at
ATH1-121501:265677_AT PUR alpha-1 protein at
CANINE:1596977_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
CANINE_2:CFA.14651.1.A1_S_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
CANINE_2:CFA.9106.1.S1_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
CANINE_2:CFAAFFX.9552.1.S1_AT similar to Transcriptional activator protein PUR-alpha (Purine-rich single-stranded DNA-binding protein alpha) cfa
DROSOPHILA_2:1637411_S_AT Purine-rich binding protein- dm
DROSGENOME1:153825_AT Purine-rich binding protein- dm
HG-U133A:204021_S_AT purine-rich element binding protein A hs
HG-U133_PLUS_2:204021_S_AT purine-rich element binding protein A hs
HG-U133A_2:204021_S_AT purine-rich element binding protein A hs
HG-U95AV2:35221_AT purine-rich element binding protein A hs
HU35KSUBD:RC_AA477831_S_AT purine-rich element binding protein A hs
HUGENEFL:X91648_AT purine-rich element binding protein A hs
HUGENEFL:M96684_AT purine-rich element binding protein A hs
U133_X3P:G5032006_3P_A_AT purine-rich element binding protein A hs
U133_X3P:HS.29117.0.S2_3P_AT purine-rich element binding protein A hs
HG-U133A_2:204020_AT purine-rich element binding protein A hs
HG-FOCUS:204020_AT purine-rich element binding protein A hs
HG-U133_PLUS_2:204020_AT purine-rich element binding protein A hs
HG-U133A:204020_AT purine-rich element binding protein A hs
HG-U95AV2:41344_S_AT purine-rich element binding protein A hs
HG-U133_PLUS_2:229167_AT Purine-rich element binding protein A hs
HG-U133B:229167_AT Purine-rich element binding protein A hs
U133_X3P:HS.115850.0.A1_3P_AT Purine-rich element binding protein A hs
HG-U95E:88570_AT Purine-rich element binding protein A hs
HG-U133A_2:213806_AT Purine-rich element binding protein A hs
HG-U133_PLUS_2:213806_AT Purine-rich element binding protein A hs
HG-U133A:213806_AT Purine-rich element binding protein A hs
HG-U95AV2:41345_AT Purine-rich element binding protein A hs
U133_X3P:HS.29117.1.A1_3P_AT Purine-rich element binding protein A hs
MU11KSUBA:U02098_S_AT purine rich element binding protein A mm
MG-U74AV2:103501_AT purine rich element binding protein A mm
MOE430A:1449934_AT purine rich element binding protein A mm
MOUSE430A_2:1449934_AT purine rich element binding protein A mm
MOUSE430_2:1449934_AT purine rich element binding protein A mm
MOE430A:1420628_AT purine rich element binding protein A mm
MOUSE430A_2:1420628_AT purine rich element binding protein A mm
MOUSE430_2:1420628_AT purine rich element binding protein A mm
MG-U74BV2:111767_AT Purine rich element binding protein A (Pura), mRNA mm
MG-U74BV2:114967_AT Purine rich element binding protein A (Pura), mRNA mm
MOE430A:1438219_AT Purine rich element binding protein A (Pura), mRNA mm
MOUSE430A_2:1438219_AT Purine rich element binding protein A (Pura), mRNA mm
MOUSE430_2:1438219_AT Purine rich element binding protein A (Pura), mRNA mm
MOUSE430_2:1456898_AT Purine rich element binding protein A (Pura), mRNA mm
MOE430B:1456898_AT Purine rich element binding protein A (Pura), mRNA mm
MU19KSUBB:TC31927_AT Purine rich element binding protein A (Pura), mRNA mm
MU19KSUBC:TC36069_AT Purine rich element binding protein A (Pura), mRNA mm
RAE230A:1377119_AT purine rich element binding protein A (predicted) rn
RAT230_2:1377119_AT purine rich element binding protein A (predicted) rn
RAE230A:1375682_AT Purine rich element binding protein A (predicted) rn
RAT230_2:1375682_AT Purine rich element binding protein A (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK29814 Pur alpha like protein protein 1 [Caenorhabditis elegans] ref|NP_501241.1| Pur alpha Like Protein family member (plp-1) [Caenorhabditis elegans] 1.0E-123
blast CAE61929 Hypothetical protein CBG05926 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR006628 EMBL-EBI PUR-alpha/beta/gamma, DNA/RNA-binding 1.0E-126
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 1.1E-54
Pfam IPR006628 EMBL-EBI PUR-alpha/beta/gamma, DNA/RNA-binding 1.1E-58
Sequence
Target Sequence 
>C. ELEGANS:173043_AT
gtttgttcgcaatcttgggaaaccaaaatccanaacggcctatcgtaacgcaatcacccg
tccaatgtccgcactcgtcgatttccgcaaagagntggataacatcatcgccaaccaagg
aaagtagtgatctacaagttttctctncnnaaaaaacaatcgtaattgcataacatctat
cgaactcgagagtctcccacaaaatccctccaaatctttactgcatttgcatgtaaagat
tttacctatttttctaaactgctgtgttcctgtattttcactctacctgtttcgtttatt
t

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTTCGCAATCTTGGGAAACCA 46 445 15 Antisense
CAATCGTAATTGCATAACATCTATC 669 179 171 Antisense
ATTGCATAACATCTATCGAACTCGA 541 3 179 Antisense
CTATCGAACTCGAGAGTCTCCCACA 614 223 191 Antisense
AACTCGAGAGTCTCCCACAAAATCC 597 141 197 Antisense
CACAAAATCCCTCCAAATCTTTACT 370 195 212 Antisense
ATCCCTCCAAATCTTTACTGCATTT 101 39 218 Antisense
AAATCTTTACTGCATTTGCATGTAA 150 115 226 Antisense
TTACCTATTTTTCTAAACTGCTGTG 393 665 256 Antisense
AACTGCTGTGTTCCTGTATTTTCAC 512 141 271 Antisense
TTCACTCTACCTGTTTCGTTTATTT 440 687 291 Antisense
Sequence Source Affymetrix Proprietary Database