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[173040_at]

Description CEK030B3R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D33387 /DEF=C.elegans cDNA clone yk30b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 69      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 81      6grp_total > 79      4grp_total > 59      6grp_highest_sub > Da      6grp_cgc > 19      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 224.3
(3)
P 		153.1
(-3)
P 		200.1
(1)
P 		175.3
(-1.1)
P 		71
B 219.2
(1.2)
P 		248.5
(3)
P 		149.1
(-3)
P 		215.1
(1)
P 		99
C 221
(-0.4)
P 		347.5
(2.4)
P 		373.4
(3)
P 		102.9
(-3)
P 		271
avr 221.5
(1) 		249.7
(3) 		240.9
(2.4) 		164.4
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 245
(-0.9)
P 		335.2
(3)
P 		197.1
(-3)
P 		280
(0.6)
P 		284.8
(0.8)
P 		303.1
(1.6)
P 		138
B 284
(1.3)
P 		235.5
(-0.6)
P 		175.6
(-3)
P 		287.6
(1.5)
P 		195
(-2.2)
P 		326.2
(3)
P 		151
C 226.5
(-2.5)
P 		297.3
(-0.8)
P 		206
(-3)
P 		329.3
(-0.1)
P 		351.7
(0.5)
P 		459.1
(3)
P 		253
avr 251.8
(-0.9) 		289.3
(0.4) 		192.9
(-3) 		299
(0.7) 		277.2
(-0) 		362.8
(3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 81.7
(3)
P 		33.2
(-2.2)
P 		52.3
(-0.2)
P 		25.7
(-3)
P 		56
B 69.9
(3)
P 		61.4
(1.6)
P 		34.6
(-3)
P 		45.8
(-1.1)
P 		35
C 73.2
(-0)
P 		99.9
(1.4)
P 		130.1
(3)
P 		17.4
(-3)
P 		113
avr 74.9
(3) 		64.8
(1.7) 		72.3
(2.7) 		29.6
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 45.2
(-2.8)
P 		119.2
(3)
P 		42.9
(-3)
P 		71
(-0.8)
P 		85.9
(0.4)
P 		73.8
(-0.6)
P 		76
B 98.8
(1.3)
P 		78.4
(-0.3)
P 		42.6
(-3)
P 		76.2
(-0.4)
P 		79.2
(-0.2)
P 		121.6
(3)
P 		79
C 84
(-1.1)
P 		90.7
(-0.7)
P 		52.4
(-3)
P 		66.2
(-2.2)
P 		113.8
(0.6)
P 		153.7
(3)
P 		101
avr 76
(-0.4) 		96.1
(1.3) 		46
(-3) 		71.1
(-0.9) 		93
(1) 		116.4
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173040_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27386
Sequence Type Exemplar sequence
Representative Public ID CEK030B3R NCBI
Target Description CEK030B3R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D33387 /DEF=C.elegans cDNA clone yk30b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076465(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076465 NCBI Caenorhabditis elegans Unidentified Vitellogenin-linked Transcript family member (uvt-3) (uvt-3) mRNA, complete cds. 9/11 None
C42D8.3 ENSEMBL cdna:known chromosome:CEL140:X:5087823:5092478:1 gene:C42D8.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5091590-5092479(+) 98.91 98.91
Public Domain and Genome References
Gene Title
Gene Symbol uvt-3
Ensembl C42D8.3
Entrez Gene 180779 Entrez gene
SwissProt Q18580 EMBL-EBI
WormBase CE04204 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253469_AT eukaryotic pantothenate kinase family protein at
CANINE:1591418_AT similar to pantothenate kinase 4 cfa
CANINE_2:CFA.19048.1.S1_S_AT similar to pantothenate kinase 4 cfa
CANINE_2:CFA.19159.1.A1_AT similar to pantothenate kinase 4 cfa
CANINE_2:CFAAFFX.29684.1.S1_AT similar to pantothenate kinase 4 cfa
CANINE_2:CFAAFFX.29685.1.S1_S_AT similar to pantothenate kinase 4 cfa
DROSOPHILA_2:1627123_AT dm
DROSGENOME1:145810_AT dm
CHICKEN:GGAAFFX.23349.2.S1_AT similar to pantothenate kinase 4; hypothetical protein Fang1 gga
CHICKEN:GGAAFFX.23349.2.S1_S_AT similar to pantothenate kinase 4; hypothetical protein Fang1 gga
HG-U133_PLUS_2:218771_AT pantothenate kinase 4 hs
HG-U133A:218771_AT pantothenate kinase 4 hs
HG-U133A_2:218771_AT pantothenate kinase 4 hs
HU35KSUBA:RC_AA287908_AT pantothenate kinase 4 hs
HU35KSUBC:RC_AA036867_AT pantothenate kinase 4 hs
U133_X3P:G8922664_3P_AT pantothenate kinase 4 hs
HG-U95B:43960_AT pantothenate kinase 4 hs
HG-U95E:78976_AT Pantothenate kinase 4 hs
MG-U74BV2:110290_AT pantothenate kinase 4 mm
MOE430B:1435004_AT pantothenate kinase 4 mm
MOUSE430_2:1435004_AT pantothenate kinase 4 mm
MU19KSUBA:TC25125_AT Pantothenate kinase 4, mRNA (cDNA clone MGC:60708 IMAGE:30018732) mm
RG-U34C:RC_AI232579_AT pantothenate kinase 4 rn
RAE230A:1369938_AT pantothenate kinase 4 rn
RAT230_2:1369938_AT pantothenate kinase 4 rn
Protein Similarities
Method ID Description E-Value
blast NP_508866 Unidentified Vitellogenin-linked Transcript family member (uvt-3) [Caenorhabditis elegans] gb|AAA98718.1| Unidentified vitellogenin-linked transcript protein 3 [Caenorhabditis elegans] 0.0
blast CAE68691 Hypothetical protein CBG14606 [Caenorhabditis briggsae] 0.0
blast NP_060686 pantothenate kinase 4 [Homo sapiens] emb|CAI20410.1| pantothenate kinase 4 [Homo sapiens] gb|AAH43496.1| Pantothenate kinase 4 [Homo sapiens] tpg|DAA00006.1| TPA: pantothenate kinase 4; PANK4 [Homo sapiens] dbj|BAA91805.1| unnamed protein product [Homo sapiens] sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 (Pantothenic acid kinase 4) (hPanK4) 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR004567 EMBL-EBI Eukaryotic pantothenate kinase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173040_AT
aaactaatatcccatgtgtcattctcaacaaccggtgatatattcaagagcgtgtgattc
gtgattcttaactctttctcatatcgacaactctttcaattttcatatttgtgcatttcg
aaaacaatttgtatttctgtctcctgtgtgtacttcagtttttatatactttcctcaaaa
ttatgcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTAATATCCCATGTGTCATTCT 666 125 159 Antisense
GTGTCATTCTCAACAACCGGTGATA 46 487 174 Antisense
ACCGGTGATATATTCAAGAGCGTGT 411 89 189 Antisense
GAGCGTGTGATTCGTGATTCTTAAC 176 387 206 Antisense
GTGATTCGTGATTCTTAACTCTTTC 671 483 212 Antisense
AACTCTTTCTCATATCGACAACTCT 228 141 228 Antisense
ATCGACAACTCTTTCAATTTTCATA 260 37 241 Antisense
CAATTTGTATTTCTGTCTCCTGTGT 359 181 283 Antisense
GTCTCCTGTGTGTACTTCAGTTTTT 696 469 297 Antisense
TCAGTTTTTATATACTTTCCTCAAA 53 625 313 Antisense
ATACTTTCCTCAAAATTATGCTTTA 143 25 324 Antisense
Sequence Source Affymetrix Proprietary Database