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[173038_at]

Description CEK020D5R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32711 /DEF=C.elegans cDNA clone yk20d5 : 3prime end, single read.
Cluster 6grp_total > 38      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 53.8
(1.5)
A 		33
(-0.4)
A 		4.9
(-3)
A 		70.8
(3)
A 		66
B 56.9
(3)
A 		26.7
(-1.1)
A 		22.9
(-1.6)
A 		12.9
(-3)
A 		44
C 75.2
(3)
A 		45.6
(-3)
A 		65.4
(1)
A 		49.4
(-2.2)
P 		30
avr 62
(3) 		35.1
(-2.2) 		31.1
(-3) 		44.4
(-0.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 62.1
(3)
A 		41.5
(-0.1)
A 		22.2
(-3)
A 		35.4
(-1)
A 		34.6
(-1.1)
A 		39.8
(-0.4)
A 		40
B 65
(3)
P 		64.8
(3)
A 		35.3
(-0.4)
A 		12
(-3)
A 		38.5
(0)
A 		58.1
(2.2)
P 		53
C 51.9
(0.5)
A 		73.4
(3)
A 		22.4
(-3)
A 		26.2
(-2.6)
A 		59.1
(1.3)
A 		45.6
(-0.3)
A 		51
avr 59.7
(3) 		59.9
(3) 		26.6
(-2.6) 		24.5
(-3) 		44.1
(0.3) 		47.8
(0.9) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 19.6
(3)
A 		7.2
(-1.1)
A 		1.3
(-3)
A 		10.4
(-0)
A 		18
B 18.1
(3)
A 		6.6
(-1.5)
A 		5.3
(-2)
A 		2.7
(-3)
A 		15
C 24.9
(3)
A 		13.1
(-1.3)
A 		22.8
(2.2)
A 		8.3
(-3)
P 		17
avr 20.9
(3) 		9
(-2.2) 		9.8
(-1.8) 		7.1
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.5
(1)
A 		14.8
(3)
A 		4.8
(-3)
A 		9
(-0.5)
A 		10.4
(0.4)
A 		9.7
(-0.1)
A 		10
B 22.6
(3)
P 		21.6
(2.7)
A 		8.6
(-1.3)
A 		3.2
(-3)
A 		15.7
(0.9)
A 		21.7
(2.7)
P 		19
C 19.2
(1.9)
A 		22.4
(3)
A 		5.7
(-2.9)
A 		5.3
(-3)
A 		19.1
(1.8)
A 		15.3
(0.5)
A 		17
avr 17.8
(2.2) 		19.6
(3) 		6.4
(-2.7) 		5.8
(-3) 		15.1
(1) 		15.6
(1.3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27375
Sequence Type Exemplar sequence
Representative Public ID CEK020D5R NCBI
Target Description CEK020D5R_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=D32711 /DEF=C.elegans cDNA clone yk20d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075755
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075755 NCBI Caenorhabditis elegans T04G9.1 (T04G9.1) mRNA, complete cds. None
T04G9.1 ENSEMBL cdna:known chromosome:CEL140:X:788410:796141:1 gene:T04G9.1 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:795243-796141(+) 93.15 99.18
Public Domain and Genome References
Gene Title
Ensembl T04G9.1
Entrez Gene 3565014 Entrez gene
SwissProt Q22173 EMBL-EBI
WormBase CE04882 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508156 T04G9.1 [Caenorhabditis elegans] gb|AAA82463.1| Hypothetical protein T04G9.1 [Caenorhabditis elegans] 0.0
blast CAE63620 Hypothetical protein CBG08113 [Caenorhabditis briggsae] 8.0E-83
Sequence
Target Sequence 
>C. ELEGANS:173038_AT
gatgcaattgcatttcgtagctgtccaaatattactgatgtgtcattttatggatcgaac
ttggatttttaatatatatattaatagagtatcatttcacttttatcattttttatgttg
aaaaatgtgtttttttttagtgtcatcatgtttttttttgtgagattattacaattatag
ttgagcggtggttttaaaatcataataacacatccctgtatttctatttgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAATTGCATTTCGTAGCTGTC 240 413 79 Antisense
ATTGCATTTCGTAGCTGTCCAAATA 157 7 85 Antisense
GCTGTCCAAATATTACTGATGTGTC 601 295 98 Antisense
GATGTGTCATTTTATGGATCGAACT 364 409 115 Antisense
ATGGATCGAACTTGGATTTTTAATA 72 51 128 Antisense
ATAGAGTATCATTTCACTTTTATCA 50 23 162 Antisense
GTGTTTTTTTTTAGTGTCATCATGT 81 487 205 Antisense
GTGTCATCATGTTTTTTTTTGTGAG 404 487 218 Antisense
CAATTATAGTTGAGCGGTGGTTTTA 324 175 250 Antisense
TAAAATCATAATAACACATCCCTGT 325 639 273 Antisense
ACATCCCTGTATTTCTATTTGATCC 71 107 288 Antisense
Sequence Source Affymetrix Proprietary Database