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[173037_at]

Description CEC156_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C08156 /DEF=C.elegans cDNA clone yk176b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 77      6grp_total > 49      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1436
1 2 3 4 range
A 2470
(2.2)
P 		2017.7
(-0.3)
P 		2617.9
(3)
P 		1512.5
(-3)
P 		1105
B 2192.1
(2.1)
P 		2317.5
(3)
P 		2140.5
(1.8)
P 		1452.6
(-3)
P 		865
C 2205.9
(0.4)
P 		2080.9
(-0.1)
P 		2818.7
(3)
P 		1382.5
(-3)
P 		1436
avr 2289.3
(1.7) 		2138.7
(0.8) 		2525.7
(3) 		1449.2
(-3) 		1077

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1046
1 2 3 4 5 6 range
A 1275.2
(1.9)
P 		1196.5
(1.1)
P 		1081.7
(-0.1)
P 		799.6
(-3)
P 		1325.2
(2.4)
P 		1381
(3)
P 		581
B 1831.4
(2.9)
P 		1305.3
(-0.3)
P 		855.1
(-3)
P 		1301.3
(-0.3)
P 		1379.6
(0.2)
P 		1845.1
(3)
P 		990
C 1644.2
(2.1)
P 		1439.7
(0.8)
P 		856.6
(-3)
P 		1020.1
(-1.9)
P 		1355.4
(0.2)
P 		1781.8
(3)
P 		925
avr 1583.6
(2.3) 		1313.8
(0.1) 		931.1
(-3) 		1040.3
(-2.1) 		1353.4
(0.4) 		1669.3
(3) 		738
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 761
1 2 3 4 range
A 899.3
(3)
P 		438
(-1.1)
P 		684.4
(1.1)
P 		221.4
(-3)
P 		678
B 699
(3)
P 		572.4
(1)
P 		496
(-0.1)
P 		309.5
(-3)
P 		390
C 730.2
(1)
P 		598.3
(-0.1)
P 		982.4
(3)
P 		233.1
(-3)
P 		749
avr 776.2
(3) 		536.2
(0.2) 		720.9
(2.4) 		254.7
(-3) 		522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 485
1 2 3 4 5 6 range
A 235.1
(-2.1)
P 		425.5
(3)
P 		235.6
(-2.1)
P 		202.8
(-3)
P 		399.9
(2.3)
P 		336.2
(0.6)
P 		223
B 637.2
(2.4)
P 		434.5
(-0.2)
P 		207.6
(-3)
P 		344.7
(-1.3)
P 		560.5
(1.4)
P 		688
(3)
P 		480
C 609.4
(3)
P 		439.3
(0.5)
P 		218
(-2.8)
P 		205.1
(-3)
P 		438.6
(0.5)
P 		596.5
(2.8)
P 		404
avr 493.9
(2.1) 		433.1
(1) 		220.4
(-3) 		250.9
(-2.4) 		466.3
(1.6) 		540.2
(3) 		320
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27098
Sequence Type Exemplar sequence
Representative Public ID CEC156 NCBI
Target Description CEC156_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C08156 /DEF=C.elegans cDNA clone yk176b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058733
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W01B11.3.2 ENSEMBL cdna:known chromosome:CEL140:I:3267093:3269116:1 gene:W01B11.3 None
W01B11.3.1 ENSEMBL cdna:known chromosome:CEL140:I:3267095:3269116:1 gene:W01B11.3 None
NM_058733 NCBI Caenorhabditis elegans W01B11.3 (W01B11.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3268768-3269041(+) 89.0 89.0
Public Domain and Genome References
Gene Title
Ensembl W01B11.3
Entrez Gene 171901 Entrez gene
SwissProt O45012 EMBL-EBI
WormBase CE18307 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259311_AT SAR DNA-binding protein, putative at
CANINE:1592484_AT similar to nucleolar protein 5 cfa
CANINE_2:CFA.15096.1.S1_S_AT similar to nucleolar protein 5 cfa
CANINE_2:CFA.3436.1.S1_AT similar to nucleolar protein 5 cfa
CANINE_2:CFAAFFX.19325.1.S1_AT similar to nucleolar protein 5 cfa
DROSOPHILA_2:1630950_AT dm
DROSGENOME1:154624_AT dm
CHICKEN:GGA.12235.1.S1_AT nucleolar protein NOP5/NOP58 gga
HG-U133B:223096_AT nucleolar protein NOP5/NOP58 hs
HG-U133_PLUS_2:223096_AT nucleolar protein NOP5/NOP58 hs
HU35KSUBC:RC_T92935_AT nucleolar protein NOP5/NOP58 hs
U133_X3P:G6841461_3P_AT nucleolar protein NOP5/NOP58 hs
HG-U95B:53711_AT nucleolar protein NOP5/NOP58 hs
MG-U74AV2:92569_F_AT nucleolar protein 5 mm
MOE430A:1450986_AT nucleolar protein 5 mm
MOUSE430A_2:1450986_AT nucleolar protein 5 mm
MOUSE430_2:1450986_AT nucleolar protein 5 mm
MU19KSUBA:TC20486_AT Nucleolar protein 5 (Nol5), mRNA mm
MU19KSUBA:TC21805_AT Nucleolar protein 5 (Nol5), mRNA mm
MU19KSUBC:TC35425_AT Nucleolar protein 5 (Nol5), mRNA mm
MU19KSUBC:TC37701_AT Nucleolar protein 5 (Nol5), mRNA mm
RG-U34A:AF069782_AT nucleolar protein 5 rn
RG-U34B:RC_AA997933_AT nucleolar protein 5 rn
RAE230A:1368173_AT nucleolar protein 5 rn
RAT230_2:1368173_AT nucleolar protein 5 rn
RAE230B:1377910_AT nucleolar protein 5 rn
RAT230_2:1377910_AT nucleolar protein 5 rn
RG-U34C:RC_AI231596_AT Nucleolar protein 5 rn
YEAST_2:1774335_AT Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA Sc
Protein Similarities
Method ID Description E-Value
blast NP_491134 W01B11.3 [Caenorhabditis elegans] gb|AAK21475.1| Hypothetical protein W01B11.3 [Caenorhabditis elegans] 0.0
blast CAE68996 Hypothetical protein CBG14983 [Caenorhabditis briggsae] 0.0
blast AAH77204 MGC78950 protein [Xenopus laevis] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR002687 EMBL-EBI Pre-mRNA processing ribonucleoprotein, binding region 2.3E-94
Sequence
Target Sequence 
>C. ELEGANS:173037_AT
caattggggtgccgacgagagtgataatccgtttcttttgttgtaaatcgtgtttctgta
ccncgaaggctgtatgttcttgttgagttgactcgttatttcttgctagtatcaggttta
tcagattttccccattgttaacacattctatctgaaatctcttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTGGGGTGCCGACGAGAGTGAT 617 179 75 Antisense
GGGTGCCGACGAGAGTGATAATCCG 501 497 81 Antisense
GTGATAATCCGTTTCTTTTGTTGTA 134 485 95 Antisense
TTGTTGTAAATCGTGTTTCTGTACC 259 707 112 Antisense
GAAGGCTGTATGTTCTTGTTGAGTT 598 333 139 Antisense
GTATGTTCTTGTTGAGTTGACTCGT 618 455 146 Antisense
GAGTTGACTCGTTATTTCTTGCTAG 686 397 159 Antisense
TTCTTGCTAGTATCAGGTTTATCAG 387 671 174 Antisense
GTTTATCAGATTTTCCCCATTGTTA 568 449 190 Antisense
GATTTTCCCCATTGTTAACACATTC 575 429 198 Antisense
AACACATTCTATCTGAAATCTCTTC 561 135 214 Antisense
Sequence Source Affymetrix Proprietary Database